Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01247 ATGGGAAGGAAGAAGACAGAGGATGCTGGCCCATCTGTGAAGGCCAAGGCTGGTAGCAAAGATGCTTCTAAGAAAGAAAAAATTTCTGTCTCTGCCATGCTAGCCAGTATGGATGAAAAGCCTGATAAACCTAAAAAAGTCTCTTCCTCCAGTAAGCCAAAGCCAAAATCTGCTCCAAAAGCTTCCACATACACTGATGGTATTGATCTTCCTCCATCTGATGATGAAGATGATGATCTCTTGGAAGAGGAGGAACAGCAAAATAATGCTGCCAAAAGGTCCAGTCAGCAGCAAAGGCCTGATTTGAAGCCACTTGATGTGCCTATTGCTGAGAAAGAGTTGAAAAAGCGTGAAAAGAAGGATCTTTTAGCTGCACATGCTGCTGAGCAGGCAAAGAAGGAGGCTCTTAAGGATGATCATGATGCTTTCACTGTGGTCATTGGAAGCAGGGCTTCAGTGCTTGATGGAGAAGATGATGTTGATGCTAATGTCAAAGATATAACAATAGAAAATTTCTCTGTGTCTGCTCGGGGTAAAGAACTTCTGAAGAATGCATCAGTGAGGATATCTCACGGGAAGAGGTATGGTTTGGTTGGGCCCAATGGAAAGGGCAAGTCCACACTGTTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCTAAGAATATTGATGTCCTTCTGGTTGAGCAGGAGGTAGTTGGTGATGATAAAACAGCTCTTGAAGCTGTTGTTTCAGCTAATGACGAACTTGTTAAAATTCGACAAGAAGTTACCTCTCTGCAGAATGCAGCTTCTGTTGAAGAAAGTGTAGACAAAGATAATGACGAGGAAGACGATACAGGAGAGAAGCTAGCAGAGCTATATGAAAAACTACAGCTGATGGGATCTGATGCTGCTGAAGCTCAGGCATCAAAGATATTAGCTGGTTTGGGTTTTACAAAGGATATGCAAGGCCGTCCTACAAAATCCTTTAGTGGTGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAACCAACTCTATTATTGCTTGATGAACCCACAAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTATTTGTGCCGTTGGAAGAAAACTCTGGTGGTTGTCTCGCATGATAGGGATTTTCTCAATACAGTGTGTACTGAGATTATTCATCTCCATGATTTAAAACTTCATTTCTATCGTGGAAATTTTGATGATTTTGAGAGTGGGTATGAACAGCGTCGTAAAGAGATGAATAAGAAGTATGAGATTTATGACAAGCAATTAAAAGCGGCTAAAAGGAGTGGAAACCGGGCTCAACAAGATAAGGTTAAGGATCGAGCTAAGTTTGCAGCAGCTAAGGAAGCATCTAAAAGCAAAGGCAAGGGCAAGGTTGATGAGGATGAGGCCCCACCAGAGGTACCTCAGAAGTGGAGGGATTACAGTGTGGAATTCCACTTTCCTGAACCTACTGAGCTCACACCCCCACTTCTGCAGCTTATAGAAGTCAGCTTTAGCTACCCAAACCGGGAGGATTTCAGACTCTCAAATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCAATTGTTGGGCCTAATGGAGCTGGAAAATCTACGTTGCTGAATCTTCTAGCTGGTGATTTGGTTCCTTCTGAAGGTGAAGTTCGAAGGAGTCAGAAGTTGAGGATAGGAAGATATTCCCAACACTTTGTGGACCTTCTAACAATGGATGAAACAGCTGTGCAGTATCTTCTGCGTCTCCATCCAGATCAGGAGGGACTTAGCAAGCAGGAGGCTGTCCGTGCAAAGCTTGGTAAGTTTGGGCTACCAAGTCATAACCATCTTACTCCCATTGCCAAACTATCAGGAGGGCAGAAAGCTCGGGTGGTCTTCACATCTATCTCCATGTCAAAACCACACATTTTATTGTTAGATGAACCCACCAATCATCTGGACATGCAAAGTATTGATGCATTGGCTGATGCACTGGATGAATTCACCGGTGGAGTTGTTCTTGTTAGTCATGATTCAAGATTGATATCACGAGTATGTGAGGATGAAGAAAGGAGTCAAATCTGGGTTGTCGAAGATGGTACTGTCAAAAACTTCCCCGGAACTTTTGAGGATTACAAGGACGACTTGCTGAGAGAGATTAAAGCTGAAGTTGATGATTGA 2181 0.4351 MGRKKTEDAGPSVKAKAGSKDASKKEKISVSAMLASMDEKPDKPKKVSSSSKPKPKSAPKASTYTDGIDLPPSDDEDDDLLEEEEQQNNAAKRSSQQQRPDLKPLDVPIAEKELKKREKKDLLAAHAAEQAKKEALKDDHDAFTVVIGSRASVLDGEDDVDANVKDITIENFSVSARGKELLKNASVRISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANDELVKIRQEVTSLQNAASVEESVDKDNDEEDDTGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDLKLHFYRGNFDDFESGYEQRRKEMNKKYEIYDKQLKAAKRSGNRAQQDKVKDRAKFAAAKEASKSKGKGKVDEDEAPPEVPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSEGEVRRSQKLRIGRYSQHFVDLLTMDETAVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEERSQIWVVEDGTVKNFPGTFEDYKDDLLREIKAEVDD 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01247 726 SMART AAA_5 525 701 IPR003593 GO:0016887
Pumo2g01247 726 SMART AAA_5 191 396 IPR003593 GO:0016887
Pumo2g01247 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 712 IPR027417 -
Pumo2g01247 726 Gene3D - 465 725 IPR027417 -
Pumo2g01247 726 MobiDBLite consensus disorder prediction 1 108 - -
Pumo2g01247 726 Coils Coil 243 263 - -
Pumo2g01247 726 MobiDBLite consensus disorder prediction 70 84 - -
Pumo2g01247 726 FunFam ABC transporter F family member 4 464 726 - -
Pumo2g01247 726 FunFam ABC transporter F family member 4 165 448 - -
Pumo2g01247 726 Coils Coil 119 139 - -
Pumo2g01247 726 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 499 724 IPR003439 GO:0005524
Pumo2g01247 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 404 IPR027417 -
Pumo2g01247 726 CDD ABCF_EF-3 167 397 - -
Pumo2g01247 726 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 167 427 IPR003439 GO:0005524
Pumo2g01247 726 MobiDBLite consensus disorder prediction 433 474 - -
Pumo2g01247 726 Pfam ABC transporter 182 352 IPR003439 GO:0005524
Pumo2g01247 726 Pfam ABC transporter 516 651 IPR003439 GO:0005524
Pumo2g01247 726 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 120 719 - -
Pumo2g01247 726 Coils Coil 416 436 - -
Pumo2g01247 726 CDD ABCF_EF-3 499 701 - -
Pumo2g01247 726 ProSitePatterns ABC transporters family signature. 324 338 IPR017871 GO:0005524|GO:0016887
Pumo2g01247 726 Gene3D - 164 448 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01247 Pumo-Chr2 17576842 17580095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01247 499 702 Calmodulin-binding Proteins AT2G36910 28.378 1.96e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01247 K06184 - gmx:100806865 1226.08