LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo2g01244	ATGGGTTGTATATGCTCGAAAGGAAAATCCGCAGACGAGTATGTTGCTGAAAACCATACCAAAGAATTGAAGGGCCATAGATCCTCCAACACCAAGCATCATCTGGGATTGGGGAGGAGAGGAGCAACGGAGAATGATGCTACCGCTACGGCTCGCCTCATATCCAATGGAAATGGGAATGGGAATGGGAATGGAACGGAAGGCGGCTCCACCCCAGTTTCCTCCGATGAACATGAACATGAACATGAACATCAAGGGGACAAGAATAATGCCAATGCCATTGTGGTTGGATCAACATCAACGGTACAACAAGGAGGAGGAGGAGGAGGAGGAGCGCAACCACCTAAGGTGTGTAGGATATTTAGTGTAACTCGAGGGGAAAGAGGAGCACAGGTTCTTGCTGGCTGGCCCTCCTGGCTCACTGCAGTTGCTGGCGAAGCCATTAGTGGTTGGATACCTCGCAGGGCTGATTCCTTTGAGAAGTTGGATAAGATTGGCCAAGGAACTTACAGCAGTGTTTATAGAGCCCGTGATCTTGAAACAAATAAAATTGTTGCTTTGAAGAAGGTTCGATTTGCTAACATGGATCCAGAAAGTGTTCGTTTTATGTCAAGGGAAATTATTGTGCTCCGAAGGCTTGATCATCCAAATGTCATGAAGCTTGAAGGCATGATTACTTCAAGGGTTTCTGGTAGCTTGTACCTTATTTTTGAATATATGGAACATGATCTTGCTGGCCTTGCAGCAATACCCGGCAACAAGTTTACCGAACCACAGATCAAGTGTTACATGCAACAGCTTCTTCACGGTCTTGAGCATTGTCACAGTCGTGGTGTTATGCACCGTGACATCAAGGGCTCAAATCTTCTGCTCGACAGTAATGGCAATCTGAAGATTGGTGATTTTGGGCTTGCAACTTTGTTTCAGCCATCTCACGGGCAGCCTTTAACAAGTCGTGTAGTAACCTTGTGGTACCGACCACCTGAACTTTTACTTGGAGCTACAGACTATGGAGTTACTGTGGATTTGTGGAGTGCTGGATGTATTCTTGCAGAGTTGTTTGTTGGGAAGCCTATAATGCCTGGACGAACAGAGGTGGAACAACTACATAAAATCTTCAAACTTTGTGGATCTCCATCTGAAGAATACTGGAAGAAATCAAAGCTACCACATGCAACAGTTTTTAAACCTCAACAACCTTACAAACGTGTTGTTTCTCAGACATTCAAGGATATTCCTTCATCTGCACTGAGCCTCTTGGAGGTCCTTCTTGCTGTAGAACCGAAAGATCGAGGAACTGCATCTTTAGCACTTCAGCATGAGTTCTTCACAGCAATGCCACTTCCTTGTGATCCATCAACTTTGCCAAAGTACCCACCGAGTAAGGAGTTCGATGCCAAACTTCGCGAAGAGGAAGCTAGAAGACGAAGAGCAGCAAATAAAGGATATGAACGTGAATCAGTTGGGAGAAATTTTAGAGAGTCCAAAGCTGTGCCAATACCTGATGCTAATGCTGAGTTTCAGGCAACTATGGGGAGACAAGTACAGTGTAATTCTAAGTGCATTACTGAGAAGTACAATCCCGAAGAGGATGGCGGTCACGAATTCCCTTGTGAACCTGCAAAGTCAAGAGCACTCAATGTATTATCTCATTCTGGCCAGTCAATGCATCCAAGTGTATATGGATCCTCACGCAATATGAATTTGAAAGAGGAAGATGTTCTCACTTGCCCTGATCATGGCTTTATATCAAGAAAGTCTGAGTTGAGAAAACAAAAATCCTATTGGCAAGGTAGCACTGCAAAATTGTCAAGATTTTCTAATTCAGTTGCAGTTCGAGGTGATTCACTGCTTGATATGAGTGGTGACTTTAGTGTGAATTCGCAGTGGCCAGAAGATCAATTTGGCATGAGATATAGCCATCAGGCTGATGGTGAGTCCAACCAATTGTTGGATGGACTCAAATCTTCACAGAAGAAGGACTTTCATCCTATTGGGAAGGATCGTGCTAAGGGCTATGCTAACAAAAATGCCCGCATGCACCATTCTGGACCATTGCTGGCTCCAGAGGATAATCTTGAAGAAATGCTTAAGGAACATGAAAGGCAAATCCAACAGGCTGTCCGCAAAGCTCGTTTGGGTAAGGACAAGAAAAAGAAGGCTGACAGTGAGAATGGCCTAACTGAATCACTATTTCACCATGTGAGAAATCAAGAGTGA	2220	0.4446	MGCICSKGKSADEYVAENHTKELKGHRSSNTKHHLGLGRRGATENDATATARLISNGNGNGNGNGTEGGSTPVSSDEHEHEHEHQGDKNNANAIVVGSTSTVQQGGGGGGGAQPPKVCRIFSVTRGERGAQVLAGWPSWLTAVAGEAISGWIPRRADSFEKLDKIGQGTYSSVYRARDLETNKIVALKKVRFANMDPESVRFMSREIIVLRRLDHPNVMKLEGMITSRVSGSLYLIFEYMEHDLAGLAAIPGNKFTEPQIKCYMQQLLHGLEHCHSRGVMHRDIKGSNLLLDSNGNLKIGDFGLATLFQPSHGQPLTSRVVTLWYRPPELLLGATDYGVTVDLWSAGCILAELFVGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATVFKPQQPYKRVVSQTFKDIPSSALSLLEVLLAVEPKDRGTASLALQHEFFTAMPLPCDPSTLPKYPPSKEFDAKLREEEARRRRAANKGYERESVGRNFRESKAVPIPDANAEFQATMGRQVQCNSKCITEKYNPEEDGGHEFPCEPAKSRALNVLSHSGQSMHPSVYGSSRNMNLKEEDVLTCPDHGFISRKSELRKQKSYWQGSTAKLSRFSNSVAVRGDSLLDMSGDFSVNSQWPEDQFGMRYSHQADGESNQLLDGLKSSQKKDFHPIGKDRAKGYANKNARMHHSGPLLAPEDNLEEMLKEHERQIQQAVRKARLGKDKKKKADSENGLTESLFHHVRNQE	739

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo2g01244	739	Pfam	Protein kinase domain	159	443	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo2g01244	739	Gene3D	Transferase(Phosphotransferase) domain 1	242	483	-	-
	Pumo2g01244	739	Coils	Coil	461	481	-	-
	Pumo2g01244	739	Coils	Coil	690	717	-	-
	Pumo2g01244	739	Gene3D	Phosphorylase Kinase; domain 1	146	241	-	-
	Pumo2g01244	739	FunFam	probable serine/threonine-protein kinase At1g54610	242	483	-	-
	Pumo2g01244	739	MobiDBLite	consensus disorder prediction	702	739	-	-
	Pumo2g01244	739	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	279	291	IPR008271	GO:0004672\|GO:0006468
	Pumo2g01244	739	ProSitePatterns	Protein kinases ATP-binding region signature.	165	188	IPR017441	GO:0005524
	Pumo2g01244	739	MobiDBLite	consensus disorder prediction	20	91	-	-
	Pumo2g01244	739	MobiDBLite	consensus disorder prediction	48	72	-	-
	Pumo2g01244	739	FunFam	probable serine/threonine-protein kinase At1g54610	146	241	-	-
	Pumo2g01244	739	PANTHER	CELL DIVISION PROTEIN KINASE	157	449	-	-
	Pumo2g01244	739	CDD	STKc_CDK9_like	159	443	-	-
	Pumo2g01244	739	ProSiteProfiles	Protein kinase domain profile.	159	443	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo2g01244	739	SUPERFAMILY	Protein kinase-like (PK-like)	153	451	IPR011009	-
	Pumo2g01244	739	MobiDBLite	consensus disorder prediction	73	88	-	-
	Pumo2g01244	739	SMART	serkin_6	159	443	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo2g01244	Pumo-Chr2	17555316	17560888	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo2g01244	151	481	Core Cell Cycle Gene Families	AT5G10270	50.578	9.69e-114	351

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Pumo2g01244		Pkinase	2.4e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo2g01244	-		-	gmx:100805055	1215.68