Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01214 ATGGCCGCTGGCCGCAGAATTCGAATGCCCGCCACCTGCGCCGCTAGGGTTTTCCAATTGACAAGAGAATTAGGCCACAAGTCCGACGGCGAGACTATCGAATGGCTCCTCCAGCAAGCCGAGCCCGCCATCATTGCCGCCACCGGCACCGGAACCATCCCCGCCAATTTCTCCACCCTCAACGTCTCCCTCCGTAGCACCGGCTCCACGCTCTCCGCGCCGCCGTCTAAGTCAGCCCCCCACTCCTTTCACGGCGCCCTCGCACTTGCTCACCACCCTTACGAGGAAGCCTTTCAACACACCGCTTTGTTAGGTTTCCACCCTCACGCTCACCACCACCAGCAACAACAACACCTTCTCTCCGCTGATCAAATCGCAGAAGCGCTTCCCAGCGGCGACAACTACCTAAGAAAACGTTATCCGAGAAGATCTTTTCAAAGACGATAA 447 0.5794 MAAGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSTGSTLSAPPSKSAPHSFHGALALAHHPYEEAFQHTALLGFHPHAHHHQQQQHLLSADQIAEALPSGDNYLRKRYPRRSFQRR 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01214 148 ProSiteProfiles TCP domain profile. 1 47 IPR017887 -
Pumo2g01214 148 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 89 IPR005333 GO:0003700
Pumo2g01214 148 Pfam TCP family transcription factor 4 118 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01214 Pumo-Chr2 17337359 17337805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01214 4 130 TCP Transcription Factor Family AT1G35560 63.780 1.35e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pumo2g01214 TCP 2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01214 - - vra:106776202 236.113