Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01212 ATGGAAGAGTTTGATTATGAAGAGGTTGTAAAAGCAACAGAAAACTTCAACCCTAAAAGGATGATAGGCAAAGGAAGCCATGGCATGGTCTACAAAGGCGTTCTGACGTTAAAAGACAAGAAGAGGTTGTTGGTTGCTGTGAAGAAGCCATCTAAAGGACTTGAATCTCTTCACGACAACTCCAAGCTCGAAAACGAAATCCGAGTTCTATCCTCTCTATGCGAAAGCCGTCGCGTGGTTAATCTTCTAGGAACGACTACTAGTACTAGTACTACTCACAAACACAAGCTCATTGTGATGGAGCTCATGCCCAATGGTTCTCTCCACGACTTGCTTCATGCTAAGAAAACCCCACCGACGTGGCCTAAACGCGTTGAAATCGCCATGCAAATCGCTGGTGCACTTGAGTTTCTTCACCAAGGGAAGCCTCCGGTGATTCACAGAGACATCAAGTCCTCCAACATCTTGTTTGATTCCCATTGGAATGCCAAGTTGGCAGATTTTGGACTCGCGGTCAAAGGAGGACTTGACCCGGTGACTCAACCCGCTGGGACAATAGGCTACTTAGACCCCTCTTACACCACCCCTGATAAACTCAGCACCAAAAACGACATCTTCAGCTTCGGGGTTGTCTTGTTGGAGATCATAAGTGCTAGAAAGGCCATTGATGTGTGCAAAACGCCCGCTTCACTTGTCCAATGGGCGACTCAGTTAACGGATTTGAAACAAATTTGTGACACAAGAATGCCGCTGCCGGCTTACATGGTTCGTAGCATCACGCACTTGTTACGCTGTGCTGCACGGTGTGTCTCACAAAATGAAGATGAACGTCCTTCAGCAGGGGAACTTGTTATCGGAATGGAATTAAATTGCTTCGTGGAACGAGTCAGATTCCCCGTTTGGACGTTTTGCATTTTGGTGTGGTTCAGAAAGAGGACGAGGAAGCTCATCATCACTCCCACACGGATTCGCTCTATACCACAACAAGAGGGTGTTCGTGTTCGTGTTCGTGTTGCTCCTCTGTCAAGTGGGAACAAGCTATCCATCACCATAAAGGAGGTTTTGGCTGATGTTTCATTCGACTGA 1086 0.4696 MEEFDYEEVVKATENFNPKRMIGKGSHGMVYKGVLTLKDKKRLLVAVKKPSKGLESLHDNSKLENEIRVLSSLCESRRVVNLLGTTTSTSTTHKHKLIVMELMPNGSLHDLLHAKKTPPTWPKRVEIAMQIAGALEFLHQGKPPVIHRDIKSSNILFDSHWNAKLADFGLAVKGGLDPVTQPAGTIGYLDPSYTTPDKLSTKNDIFSFGVVLLEIISARKAIDVCKTPASLVQWATQLTDLKQICDTRMPLPAYMVRSITHLLRCAARCVSQNEDERPSAGELVIGMELNCFVERVRFPVWTFCILVWFRKRTRKLIITPTRIRSIPQQEGVRVRVRVAPLSSGNKLSITIKEVLADVSFD 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01212 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Pumo2g01212 361 Gene3D Phosphorylase Kinase; domain 1 1 102 - -
Pumo2g01212 361 ProSitePatterns Protein kinases ATP-binding region signature. 22 49 IPR017441 GO:0005524
Pumo2g01212 361 SMART serkin_6 16 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g01212 361 Pfam Protein tyrosine and serine/threonine kinase 19 284 IPR001245 GO:0004672|GO:0006468
Pumo2g01212 361 SUPERFAMILY Protein kinase-like (PK-like) 4 295 IPR011009 -
Pumo2g01212 361 Gene3D Transferase(Phosphotransferase) domain 1 103 293 - -
Pumo2g01212 361 PANTHER OS01G0253100 PROTEIN 2 284 - -
Pumo2g01212 361 ProSiteProfiles Protein kinase domain profile. 16 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01212 Pumo-Chr2 17301522 17302607 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01212 4 288 Receptor kinase-like Gene Family AT3G59420 39.731 1.53e-55 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Pumo2g01212 Pkinase 1.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01212 - - gmx:100305389 440.654