Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01196 ATGAGGCAACGTGAAGCCAATTCGGCCCAGGGTCCCAAGGTCAATTTGTTGCAGCATGCCAATGCTCTTGAGAATTTCTCCTCTCAAGCCAAATTTTTGAGCTCCAATTTTCTGTTCTCTGTCCCACCTAAGAAGCCACGCCACGAACAACCAAACCCTGAGACTGGCGGGTTTGTATTTCGACGAAGTGAAACTATTCAAGGTTCACAGAGAGTACAAGTTGAGAAGGCTTGTACTGCTCATTCAAGTCTACAAAATTCTAGTAGGAACTATGTCCAATCAGGAAAAACTAAGGTTACTCCTCAGCTTCATGAAGATAGGAGAACAACTTCCTTCCATGGAGGCTATGAGAATGACAACCGTAGATGTCCTGATGTCACTGCAACTCCAATTGTTAACAATCATAGTTCTTGGGGTTTGGATGGTTCAGTGAACAATCATACTAATTACACAGGCCAAATCAACAAGTCTTCCAACTGCATGGCTGGAGATATTGATGATGATGATGATGACATACTTGAGAACATTGATGTTGACCAAATTGTTGAGAAATATCAGTCAACTTGCACTCCCAAACCATCAATATCCAAGCTTCCTCCAATAACACCAACTGCAGATAAAGATAATTTTGCTAGACAGGGGGATAATGTTTTGCCACCAGAGCTGTGTTTAGATTGCATCCATGGTTACAAGTTAGGGTTTTGCCCTGAAGCAGCAAGTCATTTGCAGGAATTGAAGGATAATCTAATTGCAATCTCTAATGAGCTGCTTGACAATTGTGAAAACCTCAATTCTACACAGATAGCAAAGCTTCGCCATGATAGGTCACAGCTCAATAAGCAAATTCAGCAGCTTGAAAAATATATTCATTCTGGTAATCTTAATGAGGAAAGGCAAAAGTCACATTTTTCTGCATCCACGGCACCACCTACATCTTTTGTGTATGAAACACCTCAGCAAACAGTCCTCTGTAATGGATCTAAGAGATATGATACCCAGGCTTATATGGGTAATGGGACATATGGGTCATCGTTCCAGTCTCTTCCATCTTTTACTGTAGATAATTATAGCATGTCATTAGGTTCAGTGGGGAGGGAAGCATTCATCCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGAGACAAACGATGGAGCAGCTACGATTTTCCTTGGACAAAAGAGTTAGAGGTTAATAATAAAAAAGTATTTGGAAATCACTCATTTCGCCCCAATCAAAGAGAGATCATTAATGCCTCAATGAGTGGATGTGATGTTTTTGTTCTGATGCCCACTGGTGGTGGAAAGAGTCTGACCTATCAGTTACCAGCTCTTATTCGTCCCGGTATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCACCTATTGCAGGCAAATATACCGGCTGCTTACTTAAGTGCCAATATGGAATGGACTGAACAGCAGGAGATCCTCCGAGAACTTAATTCTGATTATTGTAAATACAAGTTATTATATGTGACACCCGAAAAGGTTGCCAGAAGTGATAATCTTCTTCGACACTTGGAGAATTTACATGTTCGGGAATTGCTTGCAAGGATTGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTATATTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTCGTGCAAGCACTTGGTCTTGTTAACTGCATCATTTTTCGGCAAAGTTTTAATCGCCCAAACTTATGGTATTCTGTTATCCCCAAGACCAAAAAGTGTTTGGAGGACATTGACAAATTCATCAGGGAGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTTGCTGAAAAATTACAGGAATGTGGGCATAAATGTGCATTTTATCATGGTAGCATGGATCCTGCTCAACGTACCTCTGTTCAAAAGCAGTGGAGCAAAGATGAGATCAATATAATTTGTGCTACTGTGGCATTTGGAATGGGTATTAACAAACCTGATGTCCGCTTTGTAATCCATCATTCCCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGTGGACGAGCTGGTAGAGATGGTCAACGTTCATCCTGTGTATTATATTATAGCTATAGTGATTATATACGAGTTAAGCATATGTTAAGTCAAGGAGCAATAGAGCAAAGTCCCATGACATCTGGATACAACCGTTCAAATATGATAAATTCAGGAAGGATACTAGAAACAAACACCGAAAACCTTGTGCGAATGGTCAGTTATTGTGAAAATGATGTTGATTGTCGGCGCCTTCTGCAGCTTGCTCATTTTGGAGAGAAGTTCAATTCTTCAACTTGTCAGAAAACATGTGATAATTGCTTGAAGATCACAAGTTTCATTGAGAAGGATGTCACAGAGATTGCAAAGCAATTGGTTGAACTTGTTAAGCTAACGGGACAGAGGTTCTCATCATCTCATATATTAGAAGTGTTTCGTGGTTCCTTAAGCCAAATGGTCAAGAAACACCGGCATGAGACTGTGAGCCTTCATGGTGCTGGAAAGCATCTAGCTAAGGGTGAGGCTTCCCGCATATTGCATCATCTTGTTGTCGAGGATTTTCTCGGGGAGGAAGTAAAGAAAAGTGATTTTTATGGATCAGTATCATCAATATTGAAGGTAAATGAGCCCAAGGTCCGTAATCTGTTTGCTGGGCAGAGAATTATATTGAGATTCCCATCCTCTGTAAAGGCATCAAAACCAGGGAAATCTGATGCAACTCCAGCTAAGGGTTCTCTGACGTCTGGAAAGCTAAATGTTACGCAAGTTGACACTCCTGCACCTCAAACTGAAGTGGATTTGAATCTTTCAGCTAAGTTATACACTGCCCTGCGGATGTTGAGGACAAGTCTTGTTAGAGAAGCTGGGGACGGTGTCATGGCTTACCACATATTTGGTAATGCTACGTTGCAGCAGATAAGCAAGAGAGTGCCGAGAACAAAAGAAGAACTCCTTGATATCAATGGCATTGGCAAGGCTAAAGTAAGCAAGTATGGGGATCAGATACTGGAAACCATTGAAAATACCATAAATGAACATTACAAGTTGGACAAAGTCACTAGCGGCAGCAAAGGCAGTGCAGATTCTTCCAAAAAGAGACGAGTGTCAAATGGAAATCCAGATGCAAATGCTGAGGATGATGACGCCCTCACCAAAAGTACAGGTCGTTCAAAGAAAAGGACGGTAAAGAGAAAAAATAGAAAAGCTGTGATATATGATTCTCCCGAGGAAGATTATTTTCAAGGATGCCCTGATGAAGACCTAGATTTTGACATCATAAAAATTGATGCATTAGATCAAGTGACTTGTAAAAATGCTGCAGGAAGAGTACTACCTCAATGGACAGCATCTTGA 3480 0.4055 MRQREANSAQGPKVNLLQHANALENFSSQAKFLSSNFLFSVPPKKPRHEQPNPETGGFVFRRSETIQGSQRVQVEKACTAHSSLQNSSRNYVQSGKTKVTPQLHEDRRTTSFHGGYENDNRRCPDVTATPIVNNHSSWGLDGSVNNHTNYTGQINKSSNCMAGDIDDDDDDILENIDVDQIVEKYQSTCTPKPSISKLPPITPTADKDNFARQGDNVLPPELCLDCIHGYKLGFCPEAASHLQELKDNLIAISNELLDNCENLNSTQIAKLRHDRSQLNKQIQQLEKYIHSGNLNEERQKSHFSASTAPPTSFVYETPQQTVLCNGSKRYDTQAYMGNGTYGSSFQSLPSFTVDNYSMSLGSVGREAFIPKIIEVNYIEGSGDKRWSSYDFPWTKELEVNNKKVFGNHSFRPNQREIINASMSGCDVFVLMPTGGGKSLTYQLPALIRPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQEILRELNSDYCKYKLLYVTPEKVARSDNLLRHLENLHVRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWYSVIPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPAQRTSVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMLSQGAIEQSPMTSGYNRSNMINSGRILETNTENLVRMVSYCENDVDCRRLLQLAHFGEKFNSSTCQKTCDNCLKITSFIEKDVTEIAKQLVELVKLTGQRFSSSHILEVFRGSLSQMVKKHRHETVSLHGAGKHLAKGEASRILHHLVVEDFLGEEVKKSDFYGSVSSILKVNEPKVRNLFAGQRIILRFPSSVKASKPGKSDATPAKGSLTSGKLNVTQVDTPAPQTEVDLNLSAKLYTALRMLRTSLVREAGDGVMAYHIFGNATLQQISKRVPRTKEELLDINGIGKAKVSKYGDQILETIENTINEHYKLDKVTSGSKGSADSSKKRRVSNGNPDANAEDDDALTKSTGRSKKRTVKRKNRKAVIYDSPEEDYFQGCPDEDLDFDIIKIDALDQVTCKNAAGRVLPQWTAS 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01196 1159 PANTHER DNA HELICASE RECQ FAMILY MEMBER 380 1067 - -
Pumo2g01196 1159 CDD SF2_C_RecQ 601 733 - -
Pumo2g01196 1159 ProSiteProfiles HRDC domain profile. 976 1058 IPR002121 GO:0003676
Pumo2g01196 1159 NCBIfam RecQ family ATP-dependent DNA helicase 402 877 IPR004589 GO:0004386|GO:0006310
Pumo2g01196 1159 SUPERFAMILY HRDC-like 979 1053 IPR010997 GO:0000166|GO:0044237
Pumo2g01196 1159 Pfam Helicase conserved C-terminal domain 617 723 IPR001650 -
Pumo2g01196 1159 Gene3D - 601 820 IPR027417 -
Pumo2g01196 1159 Gene3D - 374 600 IPR027417 -
Pumo2g01196 1159 Pfam HRDC domain 980 1048 IPR002121 GO:0003676
Pumo2g01196 1159 Gene3D - 824 933 IPR036388 -
Pumo2g01196 1159 MobiDBLite consensus disorder prediction 1069 1097 - -
Pumo2g01196 1159 SMART helicmild6 643 724 IPR001650 -
Pumo2g01196 1159 Pfam RecQ zinc-binding 735 817 IPR032284 -
Pumo2g01196 1159 SMART RQC_2 826 936 IPR018982 GO:0006260|GO:0006281|GO:0043138
Pumo2g01196 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 599 867 IPR027417 -
Pumo2g01196 1159 CDD DEXHc_RecQ 401 600 - -
Pumo2g01196 1159 Pfam RQC domain 823 937 IPR018982 GO:0006260|GO:0006281|GO:0043138
Pumo2g01196 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 385 742 IPR027417 -
Pumo2g01196 1159 Pfam DEAD/DEAH box helicase 412 580 IPR011545 GO:0003676|GO:0005524
Pumo2g01196 1159 Gene3D HRDC domain 973 1060 IPR044876 -
Pumo2g01196 1159 SMART ultradead3 406 609 IPR014001 -
Pumo2g01196 1159 Coils Coil 268 288 - -
Pumo2g01196 1159 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 418 593 IPR014001 -
Pumo2g01196 1159 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 532 541 IPR002464 -
Pumo2g01196 1159 FunFam ATP-dependent DNA helicase Q-like 4A 824 934 - -
Pumo2g01196 1159 FunFam Bloom syndrome, RecQ helicase 601 821 - -
Pumo2g01196 1159 FunFam ATP-dependent DNA helicase RecQ 383 600 - -
Pumo2g01196 1159 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 618 765 IPR001650 -
Pumo2g01196 1159 SMART hrdc7 976 1058 IPR002121 GO:0003676
Pumo2g01196 1159 FunFam ATP-dependent DNA helicase Q-like 4A 972 1058 - -
Pumo2g01196 1159 MobiDBLite consensus disorder prediction 1059 1108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01196 Pumo-Chr2 17180059 17188169 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01196 632 755 Eukaryotic Initiation Factors Gene Family AT3G19760 24.409 7.04e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01196 K10901 - gmx:100800006 2144.39