Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01190 ATGAAGATTGTTGTGATGCTATGGCTACCCTTGATGTTTGCACTGTTTTCATGCACGAGTTCAGCAGCTCCAGCTCCATCCACAAACACAACCACATGCCCCATGGACTTGAATTATGTGCTGAGAATCCCATGGAACACTTCTGCTTGCCACAACTTCCAACAAACTTTGGCAGCCAAAAATGGAACAGATGCAAACAATTGTTGCATATCATTGTTGTCCCTCTTTGGCATAGGACTTGCACAGCATCTCAAAGAGACTTCTCAGTTCCAACTCCCCAACCTTGCCACCTCAGTTTCATGCATCCAAGAATTCCAATCTAAGCTCTCTTCCCTCTCTCTCCCCAGCAACCTTGCTGACACCTGCTTTGACCCTCTTCAGTTTGTGATCTCCCCCAACATCTGTGCTGGGATTCAAACCATCCCTGATTGGACCAAAAAGCTTGGTCAAACCACACAACTCAACACTGCTTGCAGATCAGATCTCACTGATATCTCTCTCTGTGACGTGTGTCTACAAGCTGGCTTACAGGTCAAGCAGGAGCTTATTTCTATTGATGGTAATGCTTCACGTTCCATTGATTGTTTTTACTTTACCATTCTCTATGTTGCTGGGGTTGTGAATGAGTTTGGACCTGAAAGCAATGGTGCTGTGAGTTGCATTTTTAGTATAACGGTTTATTCACAAGGGGGGTCTGGGGGAAAGGGTCACCAGGCTCTTGTGTTTGGGTTGACAGGAGCTGGGGTTGCTTTGTTGGTGATGTCTTCTTTTTTGGGGATGTATGTGTGGTATGACAGGAAGTACAGGAGGAAAAAGCTTGAGACTTTTCAGTTTGATTTTGACCCTGAGGAACAAGGATCTAGGCCTAGATTGAGACCCAATACTGTGTCCATTTGGTTCAAAATTGCGGAACTTGAGAAGGCTACTGATAATTTTTCATCTAAGAACTTCATTGGCCGAGGTGGGTTTGGGATGGTCTTCAAGGGAACCTTGTCTGATGGAACTGTGGTGGCGGTTAAAAGGATCTTAGAATCTGATTTTCAAGGGGATGTTGATTTTTGTTATGAGGTGGAGATTATTAGCAACCTGAAGCACCGGAATCTGGTGCCGCTTAGGGGCTGTTGTGTGGCTGAGGAGAATGAGAATTATGGTGAAAGGGGAAGCCAAAGGTATCTTGTGTATGATTACATGCCAAATGGGAACCTGGAGGACCATCTCTTTTTATCAACGGACTCTCAGAAAGCAAAGGGATCATTGACTTGGCCTCAGAGGAAGAGCATAATCTTGGATGTGGCAACGGGGTTGGCCTATTTGCACTATGGAGTTAAACCTGCAATTTACCACAGGGATATCAAGGCCACTAATATACTACTTGATGCAGATATGAGGGCAAGAGTTGCTGATTTTGGGCTTGCTAAACAAAGCAGGGAGGGTCAGTCTCATCTCACAACTAGAGTGGCTGGGACTCATGGATATCTAGCCCCAGAATATGCACTCTATGGTCAGCTCACTGAGAAGAGTGATGTCTATAGCTTTGGTGTGGTTGTTTTGGAGATTATGTGTGGGAGGAAGGCTCTTGACTTGTCTTCATCAGGATCACCAAGGGCATTCTTGATCACAGATTGGGCTTGGTCATTGGTGAAGGCTGGGAAGATAGAAGAGGCTCTGGATGCTTCCCTGGTGAAGGATGAGAATTTTCCTAGTTCAAATCCTAAGAGCATAATGGAGAGGTTTTTGCTGGTGGGAATTCTATGCTCCCATGTGATGGTTGCTTTGAGGCCAACAATTGCTGATGCTTTGAAGATGTTGGAAGGTGATATTGAGGTTCCCCAAATCCCAGATCGCCCTATGCCTCTTGGCCATCCTTCATTTTATAATAATGATGGCAGTACTTTTAGCATATCTCCAGCATTAAGCGGTCCCAAATTGCAAACTGGAGACATGCTCAGGTCCATTAGTGAGAGTTAA 1968 0.4507 MKIVVMLWLPLMFALFSCTSSAAPAPSTNTTTCPMDLNYVLRIPWNTSACHNFQQTLAAKNGTDANNCCISLLSLFGIGLAQHLKETSQFQLPNLATSVSCIQEFQSKLSSLSLPSNLADTCFDPLQFVISPNICAGIQTIPDWTKKLGQTTQLNTACRSDLTDISLCDVCLQAGLQVKQELISIDGNASRSIDCFYFTILYVAGVVNEFGPESNGAVSCIFSITVYSQGGSGGKGHQALVFGLTGAGVALLVMSSFLGMYVWYDRKYRRKKLETFQFDFDPEEQGSRPRLRPNTVSIWFKIAELEKATDNFSSKNFIGRGGFGMVFKGTLSDGTVVAVKRILESDFQGDVDFCYEVEIISNLKHRNLVPLRGCCVAEENENYGERGSQRYLVYDYMPNGNLEDHLFLSTDSQKAKGSLTWPQRKSIILDVATGLAYLHYGVKPAIYHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKAGKIEEALDASLVKDENFPSSNPKSIMERFLLVGILCSHVMVALRPTIADALKMLEGDIEVPQIPDRPMPLGHPSFYNNDGSTFSISPALSGPKLQTGDMLRSISES 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01190 655 CDD STKc_IRAK 318 605 - -
Pumo2g01190 655 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
Pumo2g01190 655 SUPERFAMILY Protein kinase-like (PK-like) 291 604 IPR011009 -
Pumo2g01190 655 MobiDBLite consensus disorder prediction 636 655 - -
Pumo2g01190 655 Pfam SPARK 29 196 IPR043891 -
Pumo2g01190 655 Gene3D Phosphorylase Kinase; domain 1 283 396 - -
Pumo2g01190 655 FunFam probable receptor-like protein kinase At1g11050 274 396 - -
Pumo2g01190 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Pumo2g01190 655 Gene3D Transferase(Phosphotransferase) domain 1 397 611 - -
Pumo2g01190 655 PANTHER OS01G0750732 PROTEIN 60 611 - -
Pumo2g01190 655 ProSiteProfiles Protein kinase domain profile. 312 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g01190 655 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Pumo2g01190 655 SMART serkin_6 312 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g01190 655 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 397 611 - -
Pumo2g01190 655 Pfam Protein kinase domain 314 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01190 Pumo-Chr2 17077777 17080754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01190 19 650 Receptor kinase-like Gene Family AT1G11050 63.823 0.0 799
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Pumo2g01190 Pkinase 2.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01190 - - gmx:100806560 1219.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01190 2 17077777 17080754 Pumo6g00944 6 11682965 11685110 PCT