Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01189 ATGGATTTTGGAAAGACTAATAATGAAGCACCCAATTATGCAAAGGTTCATGACTTCGACTTGAACATTGCATATGTGGAGGAATTTGATGTGAATGCTGAAAACGAGTTTTCATCGCCCATTCTCATGAATACTCAGCAGGCTTCTCAAAATAGCATTGAAAACATGAACATAGAGGATGCAATTGCAAATAACGGGGACAAGGACAATGAAGTTCACCAATCATCTGAAGTAGTGGACACAACTATTCAAGCAGATTCTGCTGCTGAAGGAGCTACCTCTGAAGATACTAGGCAAGTTGAACCCAAGTATATTGCCTCTATCTCCTTTGCACCAGCAAGAATCTCACAACGCCGTCGTCGCCGTCGCCGTCACTGTGCAGAATCTAAGCAGAGTACTGACCCAGATAGATTCTGCACAAATTTTTATTGTAAAACAAGAAGAACTCCCATGTGGCGCAAGGGACCTCTGGGACCAAAGACATTGTGCAATGCTTGTGGCCTTCAATACCTTAAGACGGTGAAGGGTACAGGCAGTGGCCTCCCTGCTGCAGTTTCAGATGAAGATGATGCTTCTCCTGGTCCTGTCCCAGCTGAAACCGTTGAAGGGGATTCAAATCTCTAA 624 0.4439 MDFGKTNNEAPNYAKVHDFDLNIAYVEEFDVNAENEFSSPILMNTQQASQNSIENMNIEDAIANNGDKDNEVHQSSEVVDTTIQADSAAEGATSEDTRQVEPKYIASISFAPARISQRRRRRRRHCAESKQSTDPDRFCTNFYCKTRRTPMWRKGPLGPKTLCNACGLQYLKTVKGTGSGLPAAVSDEDDASPGPVPAETVEGDSNL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01189 207 Pfam GATA zinc finger 144 172 IPR000679 GO:0006355|GO:0043565
Pumo2g01189 207 SMART GATA_3 133 186 IPR000679 GO:0006355|GO:0043565
Pumo2g01189 207 ProSiteProfiles GATA-type zinc finger domain profile. 144 170 IPR000679 GO:0006355|GO:0043565
Pumo2g01189 207 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 43 172 - -
Pumo2g01189 207 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 175 - -
Pumo2g01189 207 MobiDBLite consensus disorder prediction 177 207 - -
Pumo2g01189 207 CDD ZnF_GATA 138 189 IPR000679 GO:0006355|GO:0043565
Pumo2g01189 207 Gene3D - 135 190 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01189 Pumo-Chr2 17063828 17066332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01189 139 172 C2C2-Gata Transcription Factor Family AT3G20750 64.706 4.47e-12 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo2g01189 GATA 3e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01189 - - gmx:102663335 297.36