Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01183 ATGGGAAGAAGAAACGGTGGAAGGTCTCTGCAAGAAACCCTCCGTCGTCGACTTGAGTCTTGCAAATCCAAATACTCCACCGCCGAAGAAATCGCCAACCATCTCCGTTCAATTTACCCCGATTACCACCGAACCAAACACCAAACCCTAATTCGATTTGTTCAGGAAGCTCTTCATTCCACCGCCAAGCTTAATCACACTCCTACACCCAAGCACTGCAACGACGACGACGACGAGGGAGACGCTCGAAGCGCGTCTCGAAAGCGACGGAAGAAAATCGATGACAGTGAAGAGAGATTGCAGAGGATGGAAGCGTTACACATCCGGAGGAAGGTGCAGAGATCTTCCTCAACGTCCTCTGCTTCGGAGAGCGACGACGAAGATGAAGATGAAGATGAAGAAGAAACCATGTCGACGTCGGAGGACGCAATTTACGGGGAGAGGATGGAGCCTGAGTTTGATTTGATGAAGACAATGCTGCGGAAATCGTATACGCCGAAAAAGGTTGCAGCGGAGGAAAAGAACGTTGAATTGGAGGTGGGGAATAGCAGTAAGGGCACTGCTACTAGTACTCTTGTGAATGAGGAAATGGGGAATAGCAGCAAGGGCACCACTACTAGTACTCTTGTGAATGAGGAGAGGAAGGAAGTGAAGGGTTCGGTTTCAAATGGCGAGGTGAAGGGGAAGGATGGACCGAGGTTTAAGGATTTGGGTGGGATGAAGGAGGTTTTGGAGGAACTGAAGATGGAAGTGATTGTGCCTTTGTTCCATCCTCAATTGCCTAGACAGTTAGGAGTGAAGCCAATGGCTGGCATTTTGTTGCATGGACCACCTGGCTGTGGGAAGACCAAACTTGCTCATGCTATAGCTAATGAGACTGGTCTTCCTTTCTATCAGATTTCAGCTACTGAGGTGGTTTCTGGAGTCTCAGGTGCATCTGAAGAAAATATTAGAGAGCTTTTTGCTAAAGCGTACCGGACTGCACCTTCAATTGTCTTTATTGACGAGATTGATGCAATTGCTTCTAAAAGAGAGAATCTGCAGCGTGAGATGGAGAAACGCATTGTGACGCAATTAATGACTTGCATGGATCAATCAAATAGGCTTCTTCAACCAGCGGACAATTCAGAGAGTTCCGATGATCGTCAACCTGGCTATGTTCTTGTAATTGGAGCTACAAATAGGCCTGATGCTGTTGACCCTGCCCTGAGAAGGCCTGGTCGGTTTGATCGTGAGATTATCATTGGCAATCCCGATGAATCTGCCAGGGAGGAGATCCTTTCCGTGCTTACTTGCAATCTTAGACTTGAGGGTTTATTTGATCTACGGAAAATAGCCAGGGCTACGTCAGGATTTGTTGGTGCTGATTTGGCAGCTCTGGTTGACAAGGCTGGTAATCTGGCAATGAAGAGAATAATTGATGAAAGGAAACGTGAATTGTCTCAAGATCTCATGAGCGAGCATGCTGAAGACTGGTGGAGGGAACCTTGGTCAGCTGAAGAAGTAGACAAGCTTGCCATCAAAATGTCTGATTTTGAGGAAGCAGCCAAAAAGGTGCAACCTTCATTAAGAAGAGAAGGGTTCTCTACCATTCCTAATGTAAAATGGGACGACGTTGGAGGGCTCGATCTTTTAAGGAAGGAGTTTGAACGTTACATTGTAAGGCGTATAAAATATCCTGAAGATTATGAGGAGCTTGGGGTGGATCTCGAGACGGGATTTTTGCTTTATGGACCTCCTGGTTGTGGTAAAACACTGATTGCCAAAGCTGTTGCCAATGAGGCAGGGGCTAATTTTATTCATATTAAGGGACCTGAACTTTTAAATAAATATGTTGGAGAAAGTGAGCTTGCAGTTCGTACAATGTTTAGGCCGTGCAAGGACATGTTCGCCTTTGATCATTACTCAGTGAACGAGTTATGTGCAAGACCTATGTGGATTGATGCTTTGACAACCAAACGTGGTAAAGAAGGTGGTTGGGTTATTGAACGACTATTGAACCAGTTGCTTATTGAGTTAGATGGCGCTGAGCAACGAAGAGGTGTTTTTGTGATTGGTGCTACAAATAGGCCTGAGGTGATGGATCGTGCTGTCCTGCGGCCCGGTAGGTTTGGTAAACTTCTTTATGTTCCACTTCCAAGCCCAGACGAGCGAGTTTTGATATTGAAAGCTCTTGCAAGGAATAAGGCTGTTGATGCCTCCGTGGATTTGAGTGCCATAGCAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCTGATCTTGCTGCATTGATGATTGAAGCAGCAATGGCTGCTCTTAAAGAGAAATTGACCTCAACTGAGACAACTTGCCATACATTGAGCATCAAGAGAAATCATTTTGAGGTAGCACTGACTAAAGTTTCTCCTTCTGTGTCAGAAATGGAAAAACAGTACTATCAACAATTGTCAGAGCTTTTTTAA 2442 0.4554 MGRRNGGRSLQETLRRRLESCKSKYSTAEEIANHLRSIYPDYHRTKHQTLIRFVQEALHSTAKLNHTPTPKHCNDDDDEGDARSASRKRRKKIDDSEERLQRMEALHIRRKVQRSSSTSSASESDDEDEDEDEEETMSTSEDAIYGERMEPEFDLMKTMLRKSYTPKKVAAEEKNVELEVGNSSKGTATSTLVNEEMGNSSKGTTTSTLVNEERKEVKGSVSNGEVKGKDGPRFKDLGGMKEVLEELKMEVIVPLFHPQLPRQLGVKPMAGILLHGPPGCGKTKLAHAIANETGLPFYQISATEVVSGVSGASEENIRELFAKAYRTAPSIVFIDEIDAIASKRENLQREMEKRIVTQLMTCMDQSNRLLQPADNSESSDDRQPGYVLVIGATNRPDAVDPALRRPGRFDREIIIGNPDESAREEILSVLTCNLRLEGLFDLRKIARATSGFVGADLAALVDKAGNLAMKRIIDERKRELSQDLMSEHAEDWWREPWSAEEVDKLAIKMSDFEEAAKKVQPSLRREGFSTIPNVKWDDVGGLDLLRKEFERYIVRRIKYPEDYEELGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTMFRPCKDMFAFDHYSVNELCARPMWIDALTTKRGKEGGWVIERLLNQLLIELDGAEQRRGVFVIGATNRPEVMDRAVLRPGRFGKLLYVPLPSPDERVLILKALARNKAVDASVDLSAIAKMEACENLSGADLAALMIEAAMAALKEKLTSTETTCHTLSIKRNHFEVALTKVSPSVSEMEKQYYQQLSELF 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01183 813 FunFam Ribosome biogenesis ATPase RIX7 222 416 - -
Pumo2g01183 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 526 IPR027417 -
Pumo2g01183 813 Pfam AAA+ lid domain 440 475 IPR041569 -
Pumo2g01183 813 Pfam AAA+ lid domain 734 775 IPR041569 -
Pumo2g01183 813 Gene3D - 219 416 IPR027417 -
Pumo2g01183 813 Gene3D - 532 806 IPR027417 -
Pumo2g01183 813 Pfam ATPase family associated with various cellular activities (AAA) 272 416 IPR003959 GO:0005524|GO:0016887
Pumo2g01183 813 Pfam ATPase family associated with various cellular activities (AAA) 575 711 IPR003959 GO:0005524|GO:0016887
Pumo2g01183 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 532 811 IPR027417 -
Pumo2g01183 813 PANTHER AAA-FAMILY ATPASE 101 811 - -
Pumo2g01183 813 ProSitePatterns AAA-protein family signature. 387 405 IPR003960 GO:0005524|GO:0016887
Pumo2g01183 813 Gene3D - 418 526 - -
Pumo2g01183 813 Gene3D - 713 792 - -
Pumo2g01183 813 MobiDBLite consensus disorder prediction 69 111 - -
Pumo2g01183 813 Coils Coil 86 106 - -
Pumo2g01183 813 SMART AAA_5 570 714 IPR003593 GO:0016887
Pumo2g01183 813 SMART AAA_5 268 419 IPR003593 GO:0016887
Pumo2g01183 813 ProSitePatterns AAA-protein family signature. 682 700 IPR003960 GO:0005524|GO:0016887
Pumo2g01183 813 MobiDBLite consensus disorder prediction 122 140 - -
Pumo2g01183 813 FunFam ATPase, AAA family protein 532 719 - -
Pumo2g01183 813 MobiDBLite consensus disorder prediction 62 146 - -
Pumo2g01183 813 FunFam Cell division control protein 48 homolog C 418 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01183 Pumo-Chr2 17012745 17021902 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01183 505 813 Calmodulin-binding Proteins AT3G56690 39.365 5.78e-58 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01183 K14571 - gmx:100809594 1314.67