Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01167 ATGATGGTTCTACGTGCCCCTATTGCTTCCACCAACTGCGTTATGAGCTTGACTATCTCAAGGCCAAGGCTTCTCATGAACGTGCCAAATAACTTGGAGCCTTCACCAGCCACTCAACTAATGCATAACTTGGCTCTCATTCTTGATCCACCTCTAAGGAGGCAAAACCACAACCATTTGAACACAATCCCACATTGGGAAACAGAAAATGAAGATGGTTCAAATCCTCAGGCTTGGATAACACTCCGATTTCCAAGGCCAACTCGTGTACCTAGGCCTCTTTTCCCACCACAAAACTTTGTTCCCCAGACCAATGACACTGATCATGACACCCTTTTTGAGAATACACTATTAGATGACTTCATTGATGGGGTGATTCAGCACAATAATAGACCAGGGCCACCTCCAGCAACATCTTCAGCCATTGCAGCATTGCCAATGGTGAAACTGACACAAGCCCATTTGGCCAGTGACCCCAATTGCCCAATTTGCAAAGATGAGTTTGAGCTTGATATGGAAGCCAGAGAGTTGCCATGCAAGCATTTCTACCATTCTGACTGCATCATCCCTTGGCTGCGCATGCACAACACTTGCCCTGTGTGCCGCTATGAGCTACCAGGTGTTACTAGTGCTAATGATAATTACCGTTTCCAAAATGATGAGAATGACATGAGGTTTGGGTTTGAGGATGCTGCAAGCAGCTTGATCTGGATTTGGAACCAACTGGCTTCGTTCAGGCCTATCCGTTCTGTTCTAGATTGGACACGGTCCTACTTTAATTTCCAAGAAAATCAAGTTCGTGGTCGTAGAGGTAGCTCTTGGTGGCGAGCATTGTTCGTTATATAG 846 0.4586 MMVLRAPIASTNCVMSLTISRPRLLMNVPNNLEPSPATQLMHNLALILDPPLRRQNHNHLNTIPHWETENEDGSNPQAWITLRFPRPTRVPRPLFPPQNFVPQTNDTDHDTLFENTLLDDFIDGVIQHNNRPGPPPATSSAIAALPMVKLTQAHLASDPNCPICKDEFELDMEARELPCKHFYHSDCIIPWLRMHNTCPVCRYELPGVTSANDNYRFQNDENDMRFGFEDAASSLIWIWNQLASFRPIRSVLDWTRSYFNFQENQVRGRRGSSWWRALFVI 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01167 281 CDD RING-H2_RNF126-like 160 202 - -
Pumo2g01167 281 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Pumo2g01167 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 90 206 - -
Pumo2g01167 281 SUPERFAMILY RING/U-box 142 208 - -
Pumo2g01167 281 SMART ring_2 161 201 IPR001841 -
Pumo2g01167 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 208 IPR013083 -
Pumo2g01167 281 FunFam E3 ubiquitin-protein ligase RING1-like 125 208 - -
Pumo2g01167 281 Pfam Ring finger domain 160 202 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01167 Pumo-Chr2 16864808 16866608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01167 102 262 C3H Transcription Factor Family AT1G68180 38.650 3.39e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01167 K11982 - gmx:100793656 431.795