Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01137 ATGTCATTCCGTAGCATAGTTCGTGATGTGAGAGATAGTTTTGGGAGCTTATCTAGGCGTAGTTTTGATGTGAGACTTAATGGTCATCATAGAGGAAAATCTCAAGGATCGGTGCAGGATTTGCATGACCAACCTCTAGTAATTCAAAATAGCCGCTGGGCGAGCTTACCCCCGGAATTACTATTTGATATCATTAGACGGCTAGAGGAGAGCGAGAATACATGGCCTGCTCGAAAGCACGTTGTTGCATGTGCTGCAGTTTGCCAGTCTTGGAGGAATATGTGCAAGGAAATCGTTAAGAGCCCAGAGTTCTGTGGCAAACTTACATTCCCTGTGTCCTTGAAACAGCCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTAATTTAACATACCACCTATTCCTTTGTCTCAGCCCTGCTTTGTTAGTTGAAAATGGAAAATTCCTCCTCTCTGCTAAGAGGACAAGGAGAACAACTTACACTGAGTACGTTATTTCCATGGATGCTGACAACATCTCTAGATCAAGTAACACTTACATTGGAAAGCTGAGATCAAATTTTCTTGGTACAAAATTCATTATATACGATACACAGCCTCCATACTCTTCTGCCCATATATGCCCTCCTGGGACTGGGAAGACGAGCCGCAGATTTTATTCCAAAAAGGTCTCGCCTAAGGTCCCATCTGGGAGTTACAACATAGCTCAGGTAACATATGAATTAAACGTGCTTGGAACTCGAGGCCCAAGAAAGATGCACTGTGTTATGCATTCAATACCAGCTTCAGCACTTGATGCGGGTGGCACTGTTCCTGGCCAGCCAGAGCTTCTTCCCCGTTCCCTGGAGGACTCGTTTCGGAGCATCTCATTTTCAAAGTCTCTAGATCGTTCTATTGAGTTCAGCAGTTCGCGATTTTCTGAGATTGGGGAATCCTGCATCGAGGATGATGATGGCGGCAAGATGAGACCCTTGGTTCTGAAAAACAAGCCTCCAAGATGGCATGAACAGTTACAATGCTGGTGCCTTAATTTCCGTGGACGAGTAACAGTTGCGTCTGTTAAAAACTTTCAGTTGATTGCTGCCACCCAACCAGCCGCTGGTGCACCTACACCATCTCAACCGGCTCCACCGGAGCATGATAAGATCATTCTTCAGTTTGGCAAAGTTGGGAAAGACATGTTCACCATGGATTATCGGTACCCTTTATCTGCATTCCAAGCTTTTGCAATATGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAA 1287 0.4476 MSFRSIVRDVRDSFGSLSRRSFDVRLNGHHRGKSQGSVQDLHDQPLVIQNSRWASLPPELLFDIIRRLEESENTWPARKHVVACAAVCQSWRNMCKEIVKSPEFCGKLTFPVSLKQPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYSSAHICPPGTGKTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCVMHSIPASALDAGGTVPGQPELLPRSLEDSFRSISFSKSLDRSIEFSSSRFSEIGESCIEDDDGGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01137 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Pumo2g01137 428 Pfam F-box domain 53 100 IPR001810 GO:0005515
Pumo2g01137 428 FunFam Tubby-like F-box protein 48 101 - -
Pumo2g01137 428 Gene3D Tubby Protein; Chain A 112 422 IPR025659 -
Pumo2g01137 428 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
Pumo2g01137 428 FunFam Tubby-like F-box protein 110 428 - -
Pumo2g01137 428 SUPERFAMILY Tubby C-terminal domain-like 102 428 IPR025659 -
Pumo2g01137 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Pumo2g01137 428 Pfam Tub family 114 423 IPR000007 -
Pumo2g01137 428 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Pumo2g01137 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Pumo2g01137 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Pumo2g01137 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Pumo2g01137 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Pumo2g01137 428 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Pumo2g01137 428 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Pumo2g01137 428 CDD F-box_AtTLP-like 53 97 - -
Pumo2g01137 428 PANTHER TUBBY-RELATED 29 426 - -
Pumo2g01137 428 Gene3D - 48 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01137 Pumo-Chr2 16623793 16628562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01137 1 428 TUB Transcription Factor Family AT1G76900 70.474 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pumo2g01137 Tub 1.1e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01137 K19600 - gmx:100814578 825.854