Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01119 ATGGGAGATAACAATGTCAACCTTCCACCCGGGTTTCGATTTTATCCCACAGATGAAGAGCTTGTAGTCCATTTCCTTCACAGAAAGGCATCACTTTTACCTTGCCACCCAGATGTCATCCCTGATCTTGAGGTCTACCCTTATGATCCATGGGAACTTGATGGTAGAGCTTTGGCAGAGGGAAACCAATGGTACTACTACAGTAGAAGGACACAAAATAGGGTCACTGGCAATGGGTATTGGAAAGCAACGGGAATGGAAGAACCAGTGGTTTCAAGCACAAACAACAAGAGAGTAGGCATGAAGAAATATTTTGTGTTCCATGTGGGAGAAGCCCCTGCTGGTATCAAAACCAATTGGATAATGCAAGAATATCGTCTATCAGATTCTGCTTCCTCTACCAAATCATCCAAAAGAAAACCACAACCAAAAATAGATTACAATAAATGGGTGATATGTCGTGTTTATGAGCGCAATGGAGACGATGATAATGGAACAGAGCTGTCTTGCTTGGATGAAGTATTCTTGTCATTGGATGATGATCTTGATGAAATAAGCTTACCAAATTAG 570 0.4158 MGDNNVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLEVYPYDPWELDGRALAEGNQWYYYSRRTQNRVTGNGYWKATGMEEPVVSSTNNKRVGMKKYFVFHVGEAPAGIKTNWIMQEYRLSDSASSTKSSKRKPQPKIDYNKWVICRVYERNGDDDNGTELSCLDEVFLSLDDDLDEISLPN 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01119 189 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Pumo2g01119 189 SUPERFAMILY NAC domain 5 157 IPR036093 GO:0003677|GO:0006355
Pumo2g01119 189 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Pumo2g01119 189 FunFam NAC domain-containing protein 104 17 161 - -
Pumo2g01119 189 PANTHER NAC TRANSCRIPTION FACTOR 56 8 164 - -
Pumo2g01119 189 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01119 Pumo-Chr2 16358294 16360091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01119 1 173 NAC Transcription Factor Family AT1G61110 41.667 1.80e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo2g01119 NAM 4.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01119 - - gmx:100793989 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01582 6 23014016 23015018 Pumo2g01119 2 16358294 16360091 PCT