Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01112 ATGGAGAGAGTGACTTCATCTTTTATGGGTTCCTTTTTTGTTTGGGCAATTTTGGTGCTTGATTTGGTACTTAAGGCTTCTGGCAATCAGGAAGGCGATGCGCTGAATGCATTGAAGAGCAACTTGCAAGATCCTAACAATGTTCTTCAAAGCTGGGATGCTACCCTTGTCAATCCCTGCACGTGGTTTCATGTTACATGCAACAGTGATAACAGTGTGACCCGTGTTGATCTTGGAAATGCAGACCTTTCTGGTCAACTGGTTCCACAACTTGGTCAGCTCACAAATTTACAGTACTTGGAACTTTATAGTAATAATATAACTGGAAAAATTCCAGATGAGCTTGGGAACTTAACAAATTTGGTGAGCTTGGATCTTTACTTGAACACTTTAAATGGTCCCATACCGAGTACTTTGGGCAACCTTGCAAAACTACGTTTCCTGCGTCTCAATAATAATAGCTTGACAGGAGGCATACCCATGTCTTTGACAAATGTTTCTTCACTGCAAGTGCTTGATCTTTCAAACAACCTGCTAAAAGGGGAAATCCCAGTGAATGGTTCATTTTCATTATTTACCCCCATCAGTTATCTAAATAATTCTGGCTTGATACAACCAAAAAACACTCCATCTCCAGTATCTCCAACGCCACCAGCAGCTTCTTCAGGTAACAGTAATACTGGAGCTATTGCTGGAGGAGTTGCTGCTGGTGCTGCTCTGTTGTTTGCAGCCCCTGCAATTGCACTTGCTTATTGGCGAAGAAGGAAACCTCAGGATCATTTCTTTGATGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAGGTTTTCTCTGCGTGAGCTGCAAGTTGCAACAGACAACTTTAGTAACAAACACATTCTGGGTAGAGGTGGATTTGGAAAGGTTTATAAAGGACGCTTAGCTGACGGATCTCTTGTAGCAGTAAAAAGACTTAAAGAGGAACGTACGCAGGGTGGGGAGCTGCAATTTCAAACTGAAGTGGAAATGATTAGCATGGCTGTGCATCGTAATTTGCTTCGGCTTCGTGGTTTTTGTATGACACCTACTGAACGGTTGCTTGTGTATCCTTTCATGGCTAACGGAAGTGTAGCATCATGTTTACGAGAACGTCAAGAATCCCAACAGCCACTTGGCTGGCCAGAACGGAAGCGTATTGCACTTGGATCTGCAAGGGGGCTTGCTTATTTGCATGATCATTGTGACCCTAAGATTATTCATCGTGATGTCAAAGCAGCAAATATATTGTTGGACGAGGAATTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAACTTATGGATTATAAAGATACTCATGTTACTACTGCTGTACGTGGAACAATTGGGCATATAGCACCAGAATACCTCTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAAAGGGCTTTTGATCTAGCTCGACTTGCCAATGATGATGATGTGATGTTGCTTGATTGGGTTAAAGGACTTCTCAAAGACAGGAAATTGGAAACACTGGTGGATGCAGATTTACAGGGCAATTATAATGATGAGGAGGTAGAGCAGTTAATCCAAGTGGCCTTACTATGCACACAAGGCTCTCCTATGGAAAGACCAAAGATGTCTGAGGTGGTGAGAATGCTAGAAGGTGATGGTTTGGCTGAGAAATGGGAGCAATGGCAGAAAGACGAGACGTTCCGGCAAGACTTTAACAACAACATTCATCACCCTAATGCAAATTGGATAGTAGATTCAACTTCCCATATCCAGGCAGATGAACTATCAGGTCCTAGATGA 1851 0.4252 MERVTSSFMGSFFVWAILVLDLVLKASGNQEGDALNALKSNLQDPNNVLQSWDATLVNPCTWFHVTCNSDNSVTRVDLGNADLSGQLVPQLGQLTNLQYLELYSNNITGKIPDELGNLTNLVSLDLYLNTLNGPIPSTLGNLAKLRFLRLNNNSLTGGIPMSLTNVSSLQVLDLSNNLLKGEIPVNGSFSLFTPISYLNNSGLIQPKNTPSPVSPTPPAASSGNSNTGAIAGGVAAGAALLFAAPAIALAYWRRRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMANGSVASCLRERQESQQPLGWPERKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDRKLETLVDADLQGNYNDEEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKDETFRQDFNNNIHHPNANWIVDSTSHIQADELSGPR 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01112 616 FunFam Somatic embryogenesis receptor kinase 1 27 213 - -
Pumo2g01112 616 Pfam Protein kinase domain 293 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g01112 616 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Pumo2g01112 616 FunFam Somatic embryogenesis receptor-like kinase 1 369 586 - -
Pumo2g01112 616 Gene3D Phosphorylase Kinase; domain 1 261 368 - -
Pumo2g01112 616 SUPERFAMILY L domain-like 30 203 - -
Pumo2g01112 616 ProSiteProfiles Protein kinase domain profile. 292 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g01112 616 Gene3D Ribonuclease Inhibitor 27 211 IPR032675 -
Pumo2g01112 616 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515
Pumo2g01112 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Pumo2g01112 616 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Pumo2g01112 616 SMART serkin_6 292 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g01112 616 Gene3D Transferase(Phosphotransferase) domain 1 369 586 - -
Pumo2g01112 616 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 577 - -
Pumo2g01112 616 FunFam Somatic embryogenesis receptor kinase 1 261 368 - -
Pumo2g01112 616 SUPERFAMILY Protein kinase-like (PK-like) 271 567 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01112 Pumo-Chr2 16244107 16251476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01112 1 616 Receptor kinase-like Gene Family AT4G33430 78.496 0.0 986
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Pumo2g01112 Pkinase 8.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01112 K13416 - gmx:100800522 1165.21