Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01090 ATGGCGGAGAGTGCTTCTTACGGATTGCGTCGTCCATTAGATATTCAGCAATTACAATTTGAAGCCCAGCATCGATGGTTGCGACCTGCAGAAATTTGTGAGATTCTTCGTAATTATCAGATGTTTCATATCACATCAGAACCTCATAACAGGCCACCAAGTGGTTCACTTTTTCTTTTTGATCGGAAGGTTTTGAGATACTTTAGAAAGGATGGGCATAATTGGAGAAAGAAAAAAGATGGAAAAACTGTGAAAGAAGCTCATGAAAAGTTGAAGGTTGGAAGTGTTGATGTGTTGCACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAAAGGCGAAGCTACTGGATGCTTGAACCGGAAATGATGCACATAGTATTTGTCCATTACTTGGAAGTTAAGGGTAACAAAAATATTGTAGTAAATACTGAAGGTGATGAGGTCCCATCAGATTCCCAAAAGGTAACTTCTCCATCGTCTAGCCTTCCCACACATCATAGCAGTGTTCCTTCACTGAGTACAGATTCCGTGAGCCCAACAACCAGTTTGATGTCTTTACGTGAAGATGCTGCTGATTCAGAGGATATCCACCAAGCAAGTTCTGGGTTGCGCCCATTACATGGGTCACCACATAGTGGGAATGGTCCATTGACAGAAAAGATTGATGCTGGTTCGAACAGTTCATATCTTATGCATCCCTTTTCAGGTGATCATGAACAGTCATCAATTTCTGGAACGGATTATATCCCAGTTGTTCATGGGGATAAATTTAGAGGAAATGATACTGCTTATATTGATGGTCTGAAAGCACAATGTGTGGCACCATGGGGCGCTGTCTTGCAAAGCACTTCCAAATTGCATAATGATCCTTCTCTTGCGTCATTTCCTTCCATCCCATCTAGTTCAATGGGAGATGTCCTTGAACAAGAACATACCAATTTTGGTGACCTTTTAATGAGCAAAAGAGGTCTCACTGAGGAAGCAGAGAGCTCTCAGTCTCTCCAATCAAATTGGCAGATTCCTTTTGAAGACAATTCAGGAGACATGTCAATGTTAACCCAAACCCAATCATTCGGTCTGCAATTTAGATCTGATTACGGCACCGGTTTACTAGGGAATGAAACTTGTAATGCAAGTTCTGAAATTGCTCCGATCCTGTACAGTTTCCATGGTGAACCAAATGAGCAGCCTATGCAGCAACACTATCCACAAGAGCTTGAAGATGGACAATCTCAACATGCACTAAAATCCAATTCTGCAAATAAAGTTCCTGATGAAGAAACTATCAACTATGGCTTAACTGTGAAGCGCACATTATTGGACAGAGATGAGAGCCTGAAGAAGGTTGATAGCTTCTCTCGGTGGATTACTAAGGAACTTGGAGAGGTGGCTGATTTGAATATGCAGTCCTCACCTGGTATTTCATGGAGTACAGATGAATGCCAGCATGTGATGGATGATACCTCATTGAGTCCATCTCTCTCTCAAGACCAACTGTTTAGTATAAATGATTTTTCACCTAAATGGGCTTATGCCGAGTCAGAAATTGAGGTGTTGATTATTGGATCATTTTTGAAGAGTCAACCAGAGGTGACAACCTGTAATTGGTCCTGTATGTTTGGGGAAGTTGAGGTTCCCGCTGAGGTTTTAGCTGATGGAATTTTGTGCTGTCAAGCTCCACGTCATAAGGTTGGACGGGTCCCTTTCTATGTAACATGTTCCAATAGGTTAGCTTGTAGTGAAGTGCGGGAATTCGATTTCAGAGAGGGCTTTGCTAGAAATGTAGATTTTGCAGATCTTTATAACAGTTCAACTGAAATGCTGCTTCATTTGCGACTGGAGGATTTTCTTTCTTTAAAGCCAGTGGACCCTTCAAATCATTCTTTTGAGGGTGATATGGAGAAAAGAAACTTAATTTTTAAGCTCATTTCTCTGAGAGAGGAAGAGGAATATTCAATTAAGGACGAACTGACTACAGAATTGGATATATCCCAACACATGGTGAAGGAGCATCTGTTTCACAGGCAGGTTAAAGAGAAGCTGTACTCATGGCTTCTTCACAAAGTAACTGAGAGTGGTAAAGGGCCAAATGTATTAGATGAGGATGGGCAAGGTGTGCTACATTTAGCAGCTTTTCTTGGTTATGATTGGGCCATAAATCCAATTATATCTGCTGGAGTTAATATCAACTTCCGAGATGTGAATGGATGGACAGCTCTTCATTGGGCTGCATCCTGTGGCAGAGAGCGGACAGTTGCTGTCCTTGTCTCCATGGGTGCTGATTGTGGAGCATTGACAGATCCATCTCCCGCATTTCCATCAGGTAGAACAGCTGCAGATCTTGCCTCTAGCAATGGGCACAAAGGAATTTCTGGTTTTCTTGCTGAGTCTTCATTAACTCACCACCTTGGAACCCTCAAATTGGGTGATCAAAAAGGTGGTCGGCAAGAAATTTCAGGAATGAAAGTGGTGCAGACAGTTTCAGAACGAACTGCAACACCTGTGCGATATGGTGATATGCCAGATGCCCTCTGCCTCAAGGATTCGCTTACTGCTGTGCGTAATGCAACACAAGCTGCTGATCGTATACATCAAGTATACAGAATGCAGTCATTTCAGAGGAAGCAGTTAACTCAGTATGAAGGTGATGAGCTTGGATTGTCAGATCAGCAGGCTCTTTCCCTTCTAGCTTCTAGGGCATGCAAATCTGGACAAGGAGATGGTTTAGACAATGCTGCTGCAATACAGATTCAGAAAAAGTTTCGTGGTTGGAAGAAAAGAAAAGAATTCTTGATGATTCGTCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTAAGGAAACAGTATAAACCAATCATCTGGTCTGTGGGAATCCTGGAGAAGGTCATATTACGTTGGAGGCGCAAGGGTAGCGGTTTACGTGGGTTTCGACCAAATGCCCTTAATAAAGTCCCCGATCAACAAAATGATGATTCTCTGAAAGAGGATGATTATGATTATCTCAAGGAGGGACGGAAACAAAAGGAAGAAAAGATCCAAAAGGCCCTATCAAGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGTGCTCAATACCGGCGTCTGCTAAATGTTGTTGAGGACTTCCGTCAAACCAAGGTATCTAACAAGGGTTTGATCAATTCTGAAGAGACAGTTGATGGTATGGAGGATTTGATTGATATTGATATGCTTTTAGACGATGATAATTTCATTCCTATAGCATTTAATTGA 3270 0.4208 MAESASYGLRRPLDIQQLQFEAQHRWLRPAEICEILRNYQMFHITSEPHNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEPEMMHIVFVHYLEVKGNKNIVVNTEGDEVPSDSQKVTSPSSSLPTHHSSVPSLSTDSVSPTTSLMSLREDAADSEDIHQASSGLRPLHGSPHSGNGPLTEKIDAGSNSSYLMHPFSGDHEQSSISGTDYIPVVHGDKFRGNDTAYIDGLKAQCVAPWGAVLQSTSKLHNDPSLASFPSIPSSSMGDVLEQEHTNFGDLLMSKRGLTEEAESSQSLQSNWQIPFEDNSGDMSMLTQTQSFGLQFRSDYGTGLLGNETCNASSEIAPILYSFHGEPNEQPMQQHYPQELEDGQSQHALKSNSANKVPDEETINYGLTVKRTLLDRDESLKKVDSFSRWITKELGEVADLNMQSSPGISWSTDECQHVMDDTSLSPSLSQDQLFSINDFSPKWAYAESEIEVLIIGSFLKSQPEVTTCNWSCMFGEVEVPAEVLADGILCCQAPRHKVGRVPFYVTCSNRLACSEVREFDFREGFARNVDFADLYNSSTEMLLHLRLEDFLSLKPVDPSNHSFEGDMEKRNLIFKLISLREEEEYSIKDELTTELDISQHMVKEHLFHRQVKEKLYSWLLHKVTESGKGPNVLDEDGQGVLHLAAFLGYDWAINPIISAGVNINFRDVNGWTALHWAASCGRERTVAVLVSMGADCGALTDPSPAFPSGRTAADLASSNGHKGISGFLAESSLTHHLGTLKLGDQKGGRQEISGMKVVQTVSERTATPVRYGDMPDALCLKDSLTAVRNATQAADRIHQVYRMQSFQRKQLTQYEGDELGLSDQQALSLLASRACKSGQGDGLDNAAAIQIQKKFRGWKKRKEFLMIRQRIVKIQAHVRGHQVRKQYKPIIWSVGILEKVILRWRRKGSGLRGFRPNALNKVPDQQNDDSLKEDDYDYLKEGRKQKEEKIQKALSRVKSMVQYPEARAQYRRLLNVVEDFRQTKVSNKGLINSEETVDGMEDLIDIDMLLDDDNFIPIAFN 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01090 1089 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Pumo2g01090 1089 ProSiteProfiles Ankyrin repeat profile. 737 769 IPR002110 GO:0005515
Pumo2g01090 1089 SMART CG_1_2 18 136 IPR005559 GO:0003677
Pumo2g01090 1089 Pfam IPT/TIG domain 504 578 IPR002909 -
Pumo2g01090 1089 SMART ANK_2a 737 766 IPR002110 GO:0005515
Pumo2g01090 1089 SMART ANK_2a 776 805 IPR002110 GO:0005515
Pumo2g01090 1089 SMART ANK_2a 704 733 IPR002110 GO:0005515
Pumo2g01090 1089 SUPERFAMILY Ankyrin repeat 692 798 IPR036770 -
Pumo2g01090 1089 Gene3D - 668 805 IPR036770 -
Pumo2g01090 1089 SUPERFAMILY E set domains 504 589 IPR014756 -
Pumo2g01090 1089 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Pumo2g01090 1089 ProSiteProfiles Ankyrin repeat profile. 704 736 IPR002110 GO:0005515
Pumo2g01090 1089 Pfam Ankyrin repeats (3 copies) 709 798 IPR002110 GO:0005515
Pumo2g01090 1089 ProSiteProfiles IQ motif profile. 912 941 IPR000048 GO:0005515
Pumo2g01090 1089 Pfam IQ calmodulin-binding motif 914 932 IPR000048 GO:0005515
Pumo2g01090 1089 Pfam IQ calmodulin-binding motif 937 956 IPR000048 GO:0005515
Pumo2g01090 1089 MobiDBLite consensus disorder prediction 221 244 - -
Pumo2g01090 1089 ProSiteProfiles Ankyrin repeat region circular profile. 737 763 - -
Pumo2g01090 1089 Gene3D Immunoglobulins 497 592 IPR013783 -
Pumo2g01090 1089 ProSiteProfiles IQ motif profile. 935 959 IPR000048 GO:0005515
Pumo2g01090 1089 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1051 - -
Pumo2g01090 1089 MobiDBLite consensus disorder prediction 146 244 - -
Pumo2g01090 1089 SMART iq_5 934 956 IPR000048 GO:0005515
Pumo2g01090 1089 SMART iq_5 911 933 IPR000048 GO:0005515
Pumo2g01090 1089 Gene3D - 912 958 - -
Pumo2g01090 1089 FunFam Calmodulin-binding transcription activator 2 497 593 - -
Pumo2g01090 1089 MobiDBLite consensus disorder prediction 146 189 - -
Pumo2g01090 1089 FunFam Calmodulin-binding transcription activator 2 912 959 - -
Pumo2g01090 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 913 962 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01090 Pumo-Chr2 15957259 15967571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01090 1 1070 CAMTA Transcription Factor Family AT5G64220 52.646 0.0 1075
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Pumo2g01090 CG-1 8.3e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01090 K21596 - gmx:100818124 1999.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01616 6 23552482 23557409 Pumo2g01090 2 15957259 15967571 PCT