Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01081 ATGGAAATGGAAGCAGCATCGTTGAAGTTGGAGTCCCTTGCGTGCATAGACTCCACGACTCTCTCTCACTCAGAGCTTCTCGCTCTTTCTCTCTCCTCTCTCTGCACATTCGACCTTCGCGCCACCCATGACCTCGTCACTCCCAAGATCGACCCCGCCCTCTTCAACGAGAGCACGGGCTCCCGCCGCCAGACCTACTCCCGGCCCCAGTCGTCCCCCACCGGTCGCCGCCGCCGCCTCGCCGGACTCCTCCCGGCCCCGAAGCTCCCTCCTCTCCCCTCCCACGACCCCGAAAACGCCGAAAACCGCCTCATCATCGACTACCTCAAACAACTCATCAGAGACGACCCCAAGTTCGACCAAGTAGAACTCGCTCCCCCTTCCCTTCCCCAGCCAAGGATCAAGAGGAAGCGAGGGAGAAAACCCAAAGTCAAAGTCCACTTAGAAGACTGCTACCGCGGAATCGACATTGTTAACCAAAACGGCGTCGCTGTGGATCTCCAGCAACTGGCCAACTCCCAAGACCCCTTCGCCGAGGAGTTGAAAAGACGCACCGAGGGTTTGCGCAACGAAGAGGAGCTGTTAGGGTTTTTGAGGGACTTGCCGGGGCAGTGGGGGAGCCGGAGGAAGAAGCGGAGGATCGTCGACGCTGCCGATTTCGGCGACGTCTTGCCGCTTAGCTGGAAGATTCTTCTCGGTTTGAAGAGAAAGGATGGTCGCGCATGGATCTATTGCCGCAGATACATTAGCCCCAGTGGACAGCATTTTGTGTCTTGCAAAGAGGTTTCTTCGTATTTGCAGTCTCTTTTGGGTCACGGTGATGCACAGTTGCAAATTAGTCGTAGGAGTGAAAATGTAGTGCAGGAACAGAAAGTGGCTGCTGAAAATTCTGCTGGTGTTACCCTGGAGAATCAAGATCAGAGGCAGATTGTTCCCGTGAACTCAGATGTGTCTGGTTTGTCTGCTGCTAATGAACGAGTGAAGGAGGTTGCCTTGTTGGGGATTGAAAATCTTGCAGATGTGCAGATTCATGACCTGTTTGAATGTCGCAAGTGCAACATGAGCTTTGACGAGAAGGATTTGTACTTGCAGCACCTGTTGTCGTTTCACCAGAGGACAACGAGGCGGTACCGGCTTGGTTCGTCTGTTGGAGATGGAGTTATAATTAAGGATGGTAAGTTTGAGTGCCAGTTCTGCCATAAGGTGTTTCTGGAGAGGCGTCGCTACAATGGTCATGTGGGGATCCATGTTAGGAATTATGTGAGGAAAGTTGAAGATTCGCCGGGTCAGGCAAATGTCCAGAGGACAGACGACAAGTCTCCAGTCAGGGAGGATGTGCCTTTAAGGATATCTAAGATGGATGCTCTCATTGAAATTGCTCAAAACTCTATTATGGAGGATTCTGTTGCTGAACCACATGGTTCAGCTAAACTGAATGGAATTCCTGCTTCAGATATTGCTAGTTGGTTACTTAGATCAAGACGGAAACTCTGA 1494 0.5201 MEMEAASLKLESLACIDSTTLSHSELLALSLSSLCTFDLRATHDLVTPKIDPALFNESTGSRRQTYSRPQSSPTGRRRRLAGLLPAPKLPPLPSHDPENAENRLIIDYLKQLIRDDPKFDQVELAPPSLPQPRIKRKRGRKPKVKVHLEDCYRGIDIVNQNGVAVDLQQLANSQDPFAEELKRRTEGLRNEEELLGFLRDLPGQWGSRRKKRRIVDAADFGDVLPLSWKILLGLKRKDGRAWIYCRRYISPSGQHFVSCKEVSSYLQSLLGHGDAQLQISRRSENVVQEQKVAAENSAGVTLENQDQRQIVPVNSDVSGLSAANERVKEVALLGIENLADVQIHDLFECRKCNMSFDEKDLYLQHLLSFHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRKVEDSPGQANVQRTDDKSPVREDVPLRISKMDALIEIAQNSIMEDSVAEPHGSAKLNGIPASDIASWLLRSRRKL 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01081 497 MobiDBLite consensus disorder prediction 56 78 - -
Pumo2g01081 497 Gene3D Classic Zinc Finger 340 419 - -
Pumo2g01081 497 ProSiteProfiles Zinc finger C2H2 type domain profile. 394 421 IPR013087 -
Pumo2g01081 497 SMART c2h2final6 394 416 IPR013087 -
Pumo2g01081 497 SMART c2h2final6 347 370 IPR013087 -
Pumo2g01081 497 SUPERFAMILY DNA-binding domain 220 269 IPR016177 GO:0003677
Pumo2g01081 497 ProSitePatterns Zinc finger C2H2 type domain signature. 396 416 IPR013087 -
Pumo2g01081 497 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 6 477 IPR037472 -
Pumo2g01081 497 ProSitePatterns Zinc finger C2H2 type domain signature. 349 370 IPR013087 -
Pumo2g01081 497 ProSiteProfiles Zinc finger C2H2 type domain profile. 347 375 IPR013087 -
Pumo2g01081 497 MobiDBLite consensus disorder prediction 57 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01081 Pumo-Chr2 15892445 15894142 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo2g01081 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01081 - - gmx:100526917 759.985