Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01068 ATGGAAAACGACGACGTCGACATGCACGCATCCGACACCAACGAGGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTCGAGAAGGAAATGGGATCTGTGCAAGATCCTGCTACTGCTTCTGCGAGTCAGGCCAATAGAGAGGAAATAGATTCTCGATCAGTCTTTGTAGGCAATGTGGACTATTCATGCACTCCTGAAGAAGTGCAACAGCATTTTCAGTCTTGTGGAACAGTAAACAGAGTCACCATTCGAACTGATAAGTTTGGCCAACCCAAGGGTTATGCCTATGTTGAGTTCCTTGAGGTGGAGGCTGTTCAGGAGGCCCTTTTGCTGAATGAATCTGAACTTCATGGGCGCCAATTAAAGGTAACAGCTAAAAGGACCAACATTCCAGGGATGAAACAGTATCGTCCCCGCCGGTCCAATCCTTACATGGGGGGGTTTCGAGGCAGAACTCCATATGCACCTCCCTTTATCTATTCTCCATATGGATATGGAAAGGTTCCAAGGTTCAGAATGGCAATGCGCTACAGCCCCTACTATTGA 591 0.4788 MENDDVDMHASDTNEELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPATASASQANREEIDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPYMGGFRGRTPYAPPFIYSPYGYGKVPRFRMAMRYSPYY 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01068 196 SMART rrm1_1 68 139 IPR000504 GO:0003723
Pumo2g01068 196 Coils Coil 10 44 - -
Pumo2g01068 196 Gene3D - 3 140 IPR012677 -
Pumo2g01068 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 137 IPR000504 GO:0003723
Pumo2g01068 196 MobiDBLite consensus disorder prediction 1 23 - -
Pumo2g01068 196 SUPERFAMILY RNA-binding domain, RBD 55 167 IPR035979 GO:0003676
Pumo2g01068 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 143 IPR000504 GO:0003723
Pumo2g01068 196 CDD RRM_II_PABPs 68 139 - -
Pumo2g01068 196 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 15 154 - -
Pumo2g01068 196 MobiDBLite consensus disorder prediction 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01068 Pumo-Chr2 15738328 15742729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01068 68 138 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 9.84e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01068 K14396 - gmx:100791351 374.4