LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo2g01066	ATGGAGAAGGAGAACAGCGCAGATCCAAGTTACTGGGAGATGCCAATGGCCACCTTTCTCGTAGGCCACCATTCCCACCAGCTCCACTCCATCGCTTCTTCTCCTGATCCCAACCTTCACTTCCCTCTTTTCATCGATTTCGCAGAGTTGATGGAGTTTGATCCTCGCATTGCCCATCTCCTCTTTGCTCAACCCAGCACCTACTTGAAAGTATTCGATGACGCTGCCCTTTGGGCCCATAAAATCGTATTGAGAGATATGCCGGATGACAAGAAGGGGGTTGAGAAAAAATTCGTTCATGTTCGTATTAACATCAGTGGTTCACCCCTTGAATGCCCTGAAACTTTTCCAAGCATAGGGCGTGTTCGCGTGCAGCACCGTGGAATTCTTCTCACTCTCAAGGGGATAGTAATCAGGTCCGGAGCAATCAAGATGCATGAAGGGGAGAGGAAGTACATGTGCCAAAAATGCAAAAACAGCTTCCCAGTTTATCCTGAGGTGGAAGCTCGAAACTCCATATCATTACCTTCAATTTGCCCAATTCAGCAGCAGTCCAAGCCCTGTGGAGGCAAAAAATTCCAGTATGTAGAGAATACTATAGTATGCCATGATTATCAGGAGATAAAAATTCAAGAAAGTACACAGGTGCTAGGTGTTGGGGCAATTCCTCGTTCAATTCTTGTCATCTTAAAGGATGACCTTGTGGATGTTGTTAAAGCTGGAGATGATGTGATTATCACTGGTCTCTTAACAGCAAAATGGTCTCCAGAGTTGAAGGATGTGCGCTGCGACCTTGATCCTGTATTAATTGCCAACAATATAAGGAGAATCAATGAACTGAAGTCAGAAATTGATATTTCTGATGATATTGTTAAGAAATTTGAGCAGTTTTGGGTTCACTTCAAAGATTCACCTCTAAAAGGGAGGAATGCTATTCTACGAGGAATTTGCCCGCAAGTATTTGGCCTTTTCACTGTCAAGCTGGCTGTTGCATTAACACTTATCGGAGGTGTGCAACATGTTGATGCTTCTGGAACTAGGGTAAGAGGGGAGTCCCACTTACTCTTGGTTGGTGATCCTGGCACCGGAAAATCTCAGTTTCTTAAATTTTCTGCAAAGTTGAGCAACCGTTCTGTTATTACCACTGGTTTGGGAAGCACAAGTGCAGGATTGACTGTTACTGCAGTGAAGGATGGAGGGGAATGGATGTTAGAAGCTGGGGCTCTTGTTTTAGCGGATGGAGGATTGTGTTGCATAGATGAATTTGATAGTATGAGGGAACATGACAGAGCAACAATACATGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACGCTAAGCACTAGAACAACTGTATTTGGTGCCACAAATCCCAAAGGACAGTATGATCCTGATCAACCTCTGTCCGTCAATACAACACTCTCTGGTCCTTTATTAAGCAGGTTTGATATTGTTCTTGTTCTCTTGGATACAAAAAATCCTGATTGGGATGCAGTAGTTTCATCTCATATTCTTTCTGAGGCAGAACTGGATAGAACCACCAATGATGAAGATCTGGTAAACAGCTGGCCACTTCCTACACTCAAGAGGTACATACACTATGTGAAAGAACATTTCAGACCAGTCCTAACGAGAGAGGCTGAAATAGTTATATCCAGCTATTATCAACTTCAAAGGAAATCTGCAACTGATAATGCAGCTAGAACAACTGTCCGCATGTTGGAAAGTTTGATACGCCTAGCTCAAGCCCATGCAAGGTTGATGTTCAGAAATGAGGTGACTCGATTAGATGCCATCACGGCTATTTTATGCATAGAATCCTCCATGACTACCTCAGCTATTGTGGATTGCATTGGGAATGCTCTGCATTCCAATTTTACTGACAACCCTGATCAGGAATATGCGAAGCAAGAAAAATTGATCCTAGAAAAATTGGGATCAATAGACAACATTTGA	1977	0.433	MEKENSADPSYWEMPMATFLVGHHSHQLHSIASSPDPNLHFPLFIDFAELMEFDPRIAHLLFAQPSTYLKVFDDAALWAHKIVLRDMPDDKKGVEKKFVHVRINISGSPLECPETFPSIGRVRVQHRGILLTLKGIVIRSGAIKMHEGERKYMCQKCKNSFPVYPEVEARNSISLPSICPIQQQSKPCGGKKFQYVENTIVCHDYQEIKIQESTQVLGVGAIPRSILVILKDDLVDVVKAGDDVIITGLLTAKWSPELKDVRCDLDPVLIANNIRRINELKSEIDISDDIVKKFEQFWVHFKDSPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKFSAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGQYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPDWDAVVSSHILSEAELDRTTNDEDLVNSWPLPTLKRYIHYVKEHFRPVLTREAEIVISSYYQLQRKSATDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFTDNPDQEYAKQEKLILEKLGSIDNI	658

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo2g01066	658	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	42	640	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Pumo2g01066	658	FunFam	Probable DNA helicase MCM9	286	620	-	-
	Pumo2g01066	658	SMART	AAA_5	350	499	IPR003593	GO:0016887
	Pumo2g01066	658	SUPERFAMILY	Nucleic acid-binding proteins	40	258	IPR012340	-
	Pumo2g01066	658	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	318	625	IPR027417	-
	Pumo2g01066	658	Gene3D	-	146	203	-	-
	Pumo2g01066	658	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	485	493	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Pumo2g01066	658	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	435	448	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Pumo2g01066	658	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	407	421	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Pumo2g01066	658	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	349	364	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Pumo2g01066	658	Gene3D	-	277	621	IPR027417	-
	Pumo2g01066	658	CDD	MCM9	311	615	-	-
	Pumo2g01066	658	SMART	mcm	115	617	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Pumo2g01066	658	Pfam	MCM AAA-lid domain	534	615	IPR041562	-
	Pumo2g01066	658	Gene3D	-	122	251	IPR012340	-
	Pumo2g01066	658	ProSiteProfiles	MCM family domain profile.	308	511	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Pumo2g01066	658	Pfam	MCM OB domain	122	251	IPR033762	-
	Pumo2g01066	658	Pfam	MCM P-loop domain	310	513	IPR001208	GO:0003677\|GO:0005524\|GO:0032508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo2g01066	Pumo-Chr2	15707029	15723249	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo2g01066	16	640	Core DNA Replication Machinery Family	AT2G14050	75.955	0.0	999

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo2g01066	K10738		-	gmx:100776255	1217.99