Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01058 ATGGGCCTTCATCATCACAGAAAGTTGATGCCATTGCTAGAAATCTGTGGGTCAATTTGCCATGAGAAGGAGTCCGAGCCTTGTTTATCAGATTGCAAAGTTTGCCTCAAGATCTGCCTAACCAATCCCCAATATCCTCCTTATTATTATTCTCCTCCAACACTACCACCACAATTTCCTCCTTTTCAATCATATGATGATGGTGCAGCAGATCAAGCAAACAACCACAAAATCTCCACCTATTTGTTCCTTGCACTTGCTCTTCTAACTGCTGCTTTCTTTGTCGTTTGTTGTCGTGCCATCTATACCAGGTTTAGCTCAAGGAGGAGGGAATCATCAAGGCGCCAAACACACCATGATGATGACTTTGTTGATGAAGAGCATGGCCATATGGTGGACCACCCCATATGGTATATCCGCACCCTTGGCCTTCAGCAATCAATTATCAATGCCATCACAGTTTGTAAGTATAAGAAAGGAGAGGGCTTGATTGAAGGAACGGACTGTGCTGTTTGCTTGAGTGAGTTTCAAGAGGATGAGAATCTCAGACTTTTGCCAAAATGTCATCATGCTTTTCATCTTCCTTGTATTGACACCTGGCTTAGGTCGCATACCAATTGTCCCATGTGCCGGGCTCCAATTGTTGCTGACCTTGCAACTGCTAGGATGGAGTCTAATTTTGTTGATTCAAATTCCTTGGAAAATACACACATCGAAGTTTTGGAAAGTAGTGCTTCTGATTCTGAATTGGTGAATAATAGGGTAGAGGAAGAAGGCCAATTGGAAGTTGAAGATGGAGTGAGGGTTTGTGAAACTGAAACCCCAGTTGAAGATTTTGCAAGCATTCGTCCTAGAAGATCTGTTTCTATGGATTCTTTTTCTGTTGCAAATTTCAATCTTGCTCTTGCAACAGTAGAATCTAATGGTAGCTCAAAAAGAGTGCTGGGAGGTGTGGATGAAGATTCTACTGCTTCCAAGGGGGTTATTGGAAAGGATTTGCCATCTACTTCCAAAGGTAGCTCCTCCTTCAGGTTAACAAGATATCTGCAGGGTGCTGATCCTAGTTCTTCAATGAAAAGGTCACAGTCCTACAACGGGAAATACCTTCTATCCTGGTACGGCCGCAGCCAGAAGAAGCCAAATCCTCCTCTGAGAAGCTTTTAA 1164 0.4313 MGLHHHRKLMPLLEICGSICHEKESEPCLSDCKVCLKICLTNPQYPPYYYSPPTLPPQFPPFQSYDDGAADQANNHKISTYLFLALALLTAAFFVVCCRAIYTRFSSRRRESSRRQTHHDDDFVDEEHGHMVDHPIWYIRTLGLQQSIINAITVCKYKKGEGLIEGTDCAVCLSEFQEDENLRLLPKCHHAFHLPCIDTWLRSHTNCPMCRAPIVADLATARMESNFVDSNSLENTHIEVLESSASDSELVNNRVEEEGQLEVEDGVRVCETETPVEDFASIRPRRSVSMDSFSVANFNLALATVESNGSSKRVLGGVDEDSTASKGVIGKDLPSTSKGSSSFRLTRYLQGADPSSSMKRSQSYNGKYLLSWYGRSQKKPNPPLRSF 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01058 387 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 73 217 IPR044675 -
Pumo2g01058 387 ProSiteProfiles Zinc finger RING-type profile. 169 211 IPR001841 -
Pumo2g01058 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 218 IPR013083 -
Pumo2g01058 387 Pfam Ring finger domain 168 211 IPR001841 -
Pumo2g01058 387 SMART ring_2 169 210 IPR001841 -
Pumo2g01058 387 SUPERFAMILY RING/U-box 163 217 - -
Pumo2g01058 387 MobiDBLite consensus disorder prediction 316 341 - -
Pumo2g01058 387 FunFam RING-H2 finger protein ATL54 144 217 - -
Pumo2g01058 387 CDD RING-H2_EL5-like 168 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01058 Pumo-Chr2 15643092 15644548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01058 1 267 C3H Transcription Factor Family AT1G72220 40.893 3.96e-51 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01058 - - gmx:100804758 640.573