Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01057 ATGTCTCACTCCGACACCAAGAAGAAGAAGCAGCAGCAGCAGCGCAGCAGCGGCAAGCATGAAGGTGAGGAAGAAGCGACGAAAGACGAAGGGTTGATGATAAAGCCCCAGAGCTTCACTCCCCCCATCGACACCTCCCAATGGCCGATCCTACTCAAAAACTATGAGCGCCTCAACGTCCGCACCGGCCACTACACCCCAATCCCCTCCGGCTACTCCCCTCTCAAACGCCCCCTCGCCGAGTACCTCAAATACGGCGTCCTCAACCTCGACAAGCCCGCCAACCCTTCCTCCCACGAGGTCGTGGCCTGGATCAAGCGCCTCCTCCGCGTCGAGAAAACCGGCCACTCCGGTACCCTCGACCCCAAGGTCACCGGCAACCTCATCGTCTGCATCGACCGCGCCACGCGCCTCGTGAAATCCCAGCAGGGCGCTGGAAAGGAATACGTCTGCATCGCCCGCCTCCACTCCGCCGTCCCCGATGTCTCCAAGGTCGCCCGCGCCCTCGAAACCCTCACCGGCGCCGTCTTCCAGCGTCCCCCCTTGATCTCCGCCGTCAAGCGCCAGCTCCGGATTCGGACCATCTACGAAAGTAAGCTCCTTGAGTATGACCCTGATAGGCACTTGGTTGTTTTCTGGATTTCCTGTGAGGCTGGCACCTATGTTAGGACTATGTGTGTGCACTTAGGGTTGCTTCTTGGTGTGGGTTCCCACATGCAGGAGCTTAGGAGGGTCAGGTCTGGGATCATGGGGGAGAAGGATAACATGGTCACCATGCATGATGTCATTGATGCTCAGTGGGTTTATGATAATTATAGGGATGAGACTTATTTGAGGAGGGTTGTTATGCCCTTGGAGGTTCTTTTGACCAGCTATAAGAGGCTCGTTGTGAAGGACTCTGCTGTCAATGCTATTTGTTATGGTGCTAAGTTGATGATTCCTGGGTTGCTTAGGTTTGAGAATGATGTTGAGGTTGGGGAGGAGGTTGTGCTTATGACTACTAAGGGGGAGGCTATTGCTCTTGGGATTGCTGAGATGACTACTGCTGTTATGGCCACTTGTGATCATGGGATTGTGGCCAAGATCAAGAGGGTCGTCATGGATAGGGATACTTATCCCAGGAAGTGGGGTTTGGGACCCAGGGCTTCCATGAAGAAGAGGCTTATTAGTGAAGGGAAGTTGGATAAGCATGGGAAGCCCAATGAGAAGACTCCCCAGGAGTGGCTTAGGAATCTGGTTTTGCCAACTGGCGGGGATAGTGTGATTGCTGGCTTGGCTGCTGCTCCAGAACCTGAGGATGACAAGGTTAAGAAGGAGGGAGATGGGGAAGGGAAGAAGAGAAAGAAGCATGAAAGCACAGATAGCCCTGTTGCAGTACCTGCTAAGAAGGTGAGAGTGGACGAAGTGGTAGATGAAGAGACTGTGGAGGTTGAAGTTGAGAAGAAAGAGAAGAAGAAGAAAAAGAAGAAGGATAAGGAGAACAGCAAAGTGGCATCCTCGGATGAGGAGAAGACTGAAAAGGAGAAGAAGAAGAAGCACAAGGATAAGGTTGAAGATGGTTCACCGGATGTAGACAAGTCTGAGAAGAAAAAGAAGAAGAAGAAAGACAAAGAAGCTGCTGCTGAAATTAGCAATGGAAAAGAGGATGACAGTAATGCTGATAAGAGTGAAAAGAAGAAGCATAAGAAAAAGAAAAACAAAGATGCTGAGGAAGAATAG 1719 0.516 MSHSDTKKKKQQQQRSSGKHEGEEEATKDEGLMIKPQSFTPPIDTSQWPILLKNYERLNVRTGHYTPIPSGYSPLKRPLAEYLKYGVLNLDKPANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLLLGVGSHMQELRRVRSGIMGEKDNMVTMHDVIDAQWVYDNYRDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDVEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKRLISEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSVIAGLAAAPEPEDDKVKKEGDGEGKKRKKHESTDSPVAVPAKKVRVDEVVDEETVEVEVEKKEKKKKKKKDKENSKVASSDEEKTEKEKKKKHKDKVEDGSPDVDKSEKKKKKKKDKEAAAEISNGKEDDSNADKSEKKKHKKKKNKDAEEE 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01057 572 Pfam tRNA pseudouridylate synthase B C-terminal domain 223 289 IPR032819 -
Pumo2g01057 572 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 1 558 IPR004802 GO:0006396
Pumo2g01057 572 Coils Coil 470 492 - -
Pumo2g01057 572 MobiDBLite consensus disorder prediction 493 557 - -
Pumo2g01057 572 Pfam TruB family pseudouridylate synthase (N terminal domain) 106 222 IPR002501 GO:0006396
Pumo2g01057 572 MobiDBLite consensus disorder prediction 425 572 - -
Pumo2g01057 572 SUPERFAMILY Pseudouridine synthase 45 290 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pumo2g01057 572 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 52 377 IPR004802 GO:0006396
Pumo2g01057 572 SMART DKCLD_2 44 102 IPR012960 -
Pumo2g01057 572 MobiDBLite consensus disorder prediction 464 484 - -
Pumo2g01057 572 Pfam PUA domain 293 365 IPR002478 GO:0003723
Pumo2g01057 572 CDD PseudoU_synth_hDyskerin 84 266 - -
Pumo2g01057 572 CDD PUA_Cbf5 291 365 - -
Pumo2g01057 572 Coils Coil 552 572 - -
Pumo2g01057 572 FunFam H/ACA ribonucleoprotein complex subunit CBF5 78 284 - -
Pumo2g01057 572 MobiDBLite consensus disorder prediction 1 41 - -
Pumo2g01057 572 ProSiteProfiles PUA domain profile. 292 367 - -
Pumo2g01057 572 MobiDBLite consensus disorder prediction 1 31 - -
Pumo2g01057 572 Gene3D PUA domain 45 376 IPR036974 GO:0003723
Pumo2g01057 572 NCBIfam uncharacterized domain 2 286 364 IPR004521 GO:0003723
Pumo2g01057 572 Pfam DKCLD (NUC011) domain 45 102 IPR012960 -
Pumo2g01057 572 MobiDBLite consensus disorder prediction 430 456 - -
Pumo2g01057 572 SUPERFAMILY PUA domain-like 292 373 IPR015947 -
Pumo2g01057 572 Gene3D Pseudouridine synthase 78 284 - -
Pumo2g01057 572 SMART pua_5 293 367 IPR002478 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01057 Pumo-Chr2 15639847 15641941 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01057 1 463 NAC Transcription Factor Family AT3G57150 81.425 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01057 K11131 - gmx:100806355 891.338