Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01028 ATGGCAAGAAAGAAGATACCGATCAAGAAGATAGACAACAAAAACGCGAGGCAAGTAACATTCTCAAAGAGGAGGAAAGGTCTTTTCAAGAAGGCTCAGGAGCTGTCAACTCTTTGTGATGCTGAGATTGCTCTCATAGTCTTTTCCGCCACTAGCAAGCTCTTTGAGTACGCTAGTTCAAGCATGCAACAAATACTTGAAAGGCGTAATCGGCATTCAGGGATTCAAGGATTAGATAATCCATCTATTGGGCAACAGCTTGGAGTTGGAAGTGACTCCTTTGGCATGCTGCGCAAGGAAATGGAAGATAAGACTCATGAACTGAGTCGGTTGAATGGGGAGGAGTTGCAAGGATTGACAATACAAGAATTGCAGAAACTGGAGGAACTTCTTCAAAGACGTTGGACCACTATTTCAAAAATTAAGGATGAAAAAATTATACAAGAGATCAACCACCTTAAAGCAAAGGAAGCCGAACTTAAGGAAGAGAACCAGAAACTGAAGCAGAGCTTCCTACGAGAACAAAGGCAATCATACGAGTCAATTACCTGCAGTTCATCTGATTTTCCTCAAGACTATGGTAGTTCTGACACATCTCTCAAGTTGGGGTTGCCTTTATTTGAATGA 627 0.4179 MARKKIPIKKIDNKNARQVTFSKRRKGLFKKAQELSTLCDAEIALIVFSATSKLFEYASSSMQQILERRNRHSGIQGLDNPSIGQQLGVGSDSFGMLRKEMEDKTHELSRLNGEELQGLTIQELQKLEELLQRRWTTISKIKDEKIIQEINHLKAKEAELKEENQKLKQSFLREQRQSYESITCSSSDFPQDYGSSDTSLKLGLPLFE 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01028 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo2g01028 208 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Pumo2g01028 208 Pfam K-box region 96 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo2g01028 208 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Pumo2g01028 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo2g01028 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo2g01028 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo2g01028 208 Coils Coil 143 177 - -
Pumo2g01028 208 SUPERFAMILY SRF-like 1 78 IPR036879 GO:0003677|GO:0046983
Pumo2g01028 208 ProSiteProfiles K-box domain profile. 87 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo2g01028 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo2g01028 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo2g01028 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo2g01028 208 FunFam Transcription factor, MADS-box 13 82 - -
Pumo2g01028 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01028 Pumo-Chr2 15369327 15388394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01028 1 205 MADS-box Gene Family AT2G22540 47.899 8.90e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo2g01028 K-box 4.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01028 - - gmx:100810422 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01649 6 24277152 24283595 Pumo2g01028 2 15369327 15388394 PCT