Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01027 ATGGTGAGAAAGAAGATACCGATCAAGAAGATCGACGACGTAACCGCGAGGCAGGTGACATTCTCAAAGAGGAAGAGTGGCCTTTTCAAGAAGGCACGCGAGCTTTCTCTTCTTTGTGATGCTGAGATTGCTCTCATAGTCTTTTCACCCGGTGGCAAGCTCTTCGAGTATGCTAGTTCAAGTATGCAGAAGGTAATTGAAAGGCATATTTTACGGTCAGAGCTGAACCTTGACAAATTAGACCTGTCATGTCCTACGGAGCAGCAGGTTAAATGTAATTATGCTGATTTGAACAAGGAATTTGGAGTCAGGACTCGTGAAATGAGACAACTGAATGGAGAAGAACTGCAAGGATTGACCCTAAGGGAACTACAGAAATTAGAAGAACGACTTGACTCATCCTTGAACCGTGTTTATAAAGCGAAGGTTGAAAATTTTATAACAGAGATCGGTATTCTTAAGCAAAAGGGAAACCAACTCATGGAAGATAACAGGCTGATAAAACAAAGGATAAAACCGAGGAATGAAATATGTTCGATCCAGAGACATGAGCATGAACAAGGCCAGTCCTTTGACACCTCCCTCACGTTGGGGCTACCTTTTCCTACTGGCTCAAAATAG 621 0.4283 MVRKKIPIKKIDDVTARQVTFSKRKSGLFKKARELSLLCDAEIALIVFSPGGKLFEYASSSMQKVIERHILRSELNLDKLDLSCPTEQQVKCNYADLNKEFGVRTREMRQLNGEELQGLTLRELQKLEERLDSSLNRVYKAKVENFITEIGILKQKGNQLMEDNRLIKQRIKPRNEICSIQRHEHEQGQSFDTSLTLGLPFPTGSK 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01027 206 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
Pumo2g01027 206 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo2g01027 206 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo2g01027 206 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo2g01027 206 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo2g01027 206 Gene3D - 14 79 IPR036879 GO:0003677|GO:0046983
Pumo2g01027 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 158 - -
Pumo2g01027 206 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo2g01027 206 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Pumo2g01027 206 Coils Coil 124 144 - -
Pumo2g01027 206 ProSiteProfiles K-box domain profile. 87 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo2g01027 206 Pfam K-box region 87 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo2g01027 206 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo2g01027 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01027 Pumo-Chr2 15340626 15353241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01027 1 201 MADS-box Gene Family AT2G22540 44.770 4.79e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo2g01027 K-box 6.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01027 - - gmx:100818433 363.229