Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01007 ATGAGTTCCAAAGGTGTTGGTGAAGATTGCCTGGGATGGGCAGCAAGAGATGCATCCGGAGTTCTATCACCTTACAAATTCAGTCGCAGGACTCTTGGCAATGAAGATGTTCACATTAAAATTACACACTGTGGTGTTTGCTACGCTGATGTAGTTTGGACAAGGAATATTCTCGGTGACTCAAAGTATCCTGTTGTGCCTGGTCATGAGATTGCTGGGATTGTGACAAAGGTTGGCTCTGATGTCCACCGTTTCAATGTTGGTGACCATGTTGGAGTTGGGACTTATGTCAACTCATGTAGGGATTGTGAGTATTGTAATGACAGAGAAGAAGTTCATTGTACCAAGGGAGTTTTCACTTTTAATGGTGTTGATTTTGATGGTACAATTACAAAAGGAGGATACTCCAGTTACATAGTAGTCCATGAGAGGTACTGCTTCACCATACCAAAATCCTATCCATTAGCTTCAGCAGCTCCTTTGCTTTGTGCTGGAATCACTGTTTATTCACCCATGGTGCGCCACAAGATGAATGAACCTGGTAAATCTCTAGGAGTGATTGGTCTTGGTGGCCTTGGTCATATGGCAGTGAAATTTGGAAAAGCATTTGGTTTGAGTGTAACAGTTTTTAGCACTAGCATATCCAAGAAAGAGGAGGCACTGAGCCTGCTTGGTGCAGACAAATTTGTTGTTTCATCTAATCAAGAGGAAATGATGGCATTGGCTAGATCGTTGGACTTTATAATCGACACGGCATCTGGTGATCACCCGTTTGATCCTTACATGGCACTGTTGAAGACATATGGTGTTTTTGTCCTAGTTGGTTTCCCTAGTGAAGTCAAATTCAGCCCTGCAAGCCTTAATATGGGATCGAAGACTGTTGCGGGAAGTGTTACAGGTGGTACAAAAGATATACAGGAGATGATTGACTTCTGTGCCGCAAACGGGATTCACCCAAAAATAGAGGTGATTCCAATCGAGTATGCTAATGAAGCTCTTGAGAGGCTCATAAATAGGGACGTCAAGTACCGGTTTGTAATAGATATTGAGAACTCCCTAAAAGAAAAATAA 1071 0.4248 MSSKGVGEDCLGWAARDASGVLSPYKFSRRTLGNEDVHIKITHCGVCYADVVWTRNILGDSKYPVVPGHEIAGIVTKVGSDVHRFNVGDHVGVGTYVNSCRDCEYCNDREEVHCTKGVFTFNGVDFDGTITKGGYSSYIVVHERYCFTIPKSYPLASAAPLLCAGITVYSPMVRHKMNEPGKSLGVIGLGGLGHMAVKFGKAFGLSVTVFSTSISKKEEALSLLGADKFVVSSNQEEMMALARSLDFIIDTASGDHPFDPYMALLKTYGVFVLVGFPSEVKFSPASLNMGSKTVAGSVTGGTKDIQEMIDFCAANGIHPKIEVIPIEYANEALERLINRDVKYRFVIDIENSLKEK 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01007 356 Pfam Zinc-binding dehydrogenase 191 313 IPR013149 -
Pumo2g01007 356 SUPERFAMILY GroES-like 16 182 IPR011032 -
Pumo2g01007 356 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 184 211 IPR029752 -
Pumo2g01007 356 SMART PKS_ER_names_mod 20 347 IPR020843 GO:0016491
Pumo2g01007 356 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 154 317 IPR036291 -
Pumo2g01007 356 Gene3D - 13 349 - -
Pumo2g01007 356 FunFam probable cinnamyl alcohol dehydrogenase 13 181 - -
Pumo2g01007 356 FunFam Putative cinnamyl alcohol dehydrogenase 6 320 349 - -
Pumo2g01007 356 FunFam Cinnamyl alcohol dehydrogenase 164 319 - -
Pumo2g01007 356 CDD CAD1 12 348 IPR047109 GO:0016616
Pumo2g01007 356 PANTHER ALDEHYDE REDUCTASE 9 352 IPR047109 GO:0016616
Pumo2g01007 356 Gene3D - 164 319 - -
Pumo2g01007 356 Pfam Alcohol dehydrogenase GroES-like domain 35 148 IPR013154 -
Pumo2g01007 356 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01007 Pumo-Chr2 15172984 15177405 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01007 2 354 Monolignol Biosynthesis Gene Families AT1G72680 73.371 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01007 K00083 - gmx:100807617 684.871