Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00988 ATGTTGGAATACAGTGAGGATATTAGCTTGATAGCTTCAGCTGTTTTTCATTGCATGAGGAGTTCTCATATGGAGATTTCATCAATCAGAGGGTTACCTGAACTGGGGATAATAGAGGATCCTAACTTCCTCCATCAGTGGCAGTTAAACTCTATTGATACAACTAGCTTAACAGGTGCTGCTTTTGGAGAGATTTTGCAAAAGCACTCATTCTCTGATAACTCAAACTTCAACCCCAAAACATCCATGGAAACATCACCAACTGGAATTGAAAGACCTGCAAAACAGCTCAGAAATAACAGCTGGAATCACAACAAAAGTCAACAACAGACATCAGAGACACAATTTGCTTCATGCTCAAATCTTCTTTCATTTGTTAATTCGAATTACACAAGTGAATTGGGACTAGTGAAGCCTAAGGTGGAGATGGTGTGTCCTAAAATCGACAACAACACTCTTGCAGACATGTTGATCTCTCAAGGAACCTTAGGAAATCAAAACTATCTTTTCAAGGCTAGCCAGGAGGCCAAAAAGATTGAAACTCGTCCTAAACTTTCTCAACCTCAAGACCACATAATAGCTGAAAGGAAGCGGCGAGAGAAACTCAGCCAACGGTTCATTGCTCTATCTGCTCTTGTTCCCGGCCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCTATAAAGTACTTGAAGCAAATGCAAGAGAAAGTGAGTGCTCTTGAGGAGGAACAGAACAGGAAGAGAACTGTGGAATCTGTGGTAATTGTGAAGAAATCTCAGCTATCTAGCGATGCTGAAGACTCTTCTTCTTCAGATACTGGTGGTGCATTTGACGAGGCACTACCTGAAATTGAAGCACGATTTTGTGAAAGAAATGTCCTCATAAGAATACACTGTGAGAAGAATAAAGGAGTCATAGAGAAAACAATCAGCGAAATTGAGAAACTCCATCTAAAAGTCATCAATAGCAGTGCCTTGACATTTGGGAGTTTCATCCTTGATATAACCATTATTGCTCAGATGGATATGGAATTTTGCATGACAGTGAAGGATCTTGTGAGAAGTTTACGCTCAGCTTTTTCATATTTCGTGTGA 1101 0.4015 MLEYSEDISLIASAVFHCMRSSHMEISSIRGLPELGIIEDPNFLHQWQLNSIDTTSLTGAAFGEILQKHSFSDNSNFNPKTSMETSPTGIERPAKQLRNNSWNHNKSQQQTSETQFASCSNLLSFVNSNYTSELGLVKPKVEMVCPKIDNNTLADMLISQGTLGNQNYLFKASQEAKKIETRPKLSQPQDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGEAIKYLKQMQEKVSALEEEQNRKRTVESVVIVKKSQLSSDAEDSSSSDTGGAFDEALPEIEARFCERNVLIRIHCEKNKGVIEKTISEIEKLHLKVINSSALTFGSFILDITIIAQMDMEFCMTVKDLVRSLRSAFSYFV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00988 366 CDD bHLH_AtNAI1_like 189 261 - -
Pumo2g00988 366 Coils Coil 225 252 - -
Pumo2g00988 366 PANTHER BHLH TRANSCRIPTION FACTOR 61 362 - -
Pumo2g00988 366 Gene3D - 185 257 IPR036638 GO:0046983
Pumo2g00988 366 SMART finulus 192 241 IPR011598 GO:0046983
Pumo2g00988 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 186 235 IPR011598 GO:0046983
Pumo2g00988 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 190 251 IPR036638 GO:0046983
Pumo2g00988 366 Pfam Helix-loop-helix DNA-binding domain 189 236 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00988 Pumo-Chr2 14975491 14978831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00988 24 366 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.226 6.69e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo2g00988 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00988 - - gmx:100798018 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00988 2 14975491 14978831 Pumo2g00988 2 14975491 14978831 ECH
Pumo6g01734 6 26146383 26148029 Pumo2g00988 2 14975491 14978831 PCT