Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00965 ATGAGTAATAGTAATTGGATGTTGGATTATGATTATCTAGACAACATTCCCCTCCCCACTCTTGACCCACCCAATTTCTCTTGGTCCTCCTCCTCTCCTCCTCCTCCTACACTCAGTGTGGAGCTCGATGACTCATTGGGAATTTCGGATGGTTTCAAGGACAACGGATCAAGAAAACGTTTGAGGTCATCTGATTCCAAAGCATGTAGAGAGAAAATGCGAAGGGATCGACTCAATGACAGGTTTATGGAACTGGGGTCTATCTTGGACCCTGGAAGGCCTCTCAAAATGGACAAGGCTGTTATATTAAGTGACGCAGTTCGAGTGGTGTCCCAGTTAAGAGAGGAAGCACAAAAGCTGAGAGAGTCCACTGAGAATCTACAAGAGAAAATCAATGAATTGAAGGCTGAGAAAAATGAGCTTCGAGATGAGAAGCAGCGACTAAAAGCAGAGAAAGAAAACCTTGAGCAGAAGCTTAAAGCCTTGAGTTCACAACCTAGCTTCCTTCCTGCGTTTCCTGCACCAGGACAAGTTGTTGGCAGCAAGCTGGTACCATTCATGGGCTATCCAGGAGTTGCCATGTGGCAGTTTTTACCACCTGCTGCTGTTGATACCTCACAGGATCATGTACTTAGGCCCCCGGTTGCATAA 651 0.4608 MSNSNWMLDYDYLDNIPLPTLDPPNFSWSSSSPPPPTLSVELDDSLGISDGFKDNGSRKRLRSSDSKACREKMRRDRLNDRFMELGSILDPGRPLKMDKAVILSDAVRVVSQLREEAQKLRESTENLQEKINELKAEKNELRDEKQRLKAEKENLEQKLKALSSQPSFLPAFPAPGQVVGSKLVPFMGYPGVAMWQFLPPAAVDTSQDHVLRPPVA 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00965 216 CDD bHLH_AtILR3_like 67 142 - -
Pumo2g00965 216 MobiDBLite consensus disorder prediction 53 67 - -
Pumo2g00965 216 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 133 IPR036638 GO:0046983
Pumo2g00965 216 Coils Coil 103 165 - -
Pumo2g00965 216 Gene3D arf6 gtpase in complex with a specific effector, jip4 112 166 - -
Pumo2g00965 216 Gene3D - 53 111 IPR036638 GO:0046983
Pumo2g00965 216 SMART finulus 68 119 IPR011598 GO:0046983
Pumo2g00965 216 Pfam Helix-loop-helix DNA-binding domain 66 113 IPR011598 GO:0046983
Pumo2g00965 216 PANTHER BHLH TRANSCRIPTION FACTOR 3 216 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Pumo2g00965 216 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 62 113 IPR011598 GO:0046983
Pumo2g00965 216 MobiDBLite consensus disorder prediction 26 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00965 Pumo-Chr2 14376892 14379798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00965 3 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 58.696 1.73e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo2g00965 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00965 - - ccaj:109814067 373.629