Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00959 ATGCTTGAGGCTTGGCTTTCTCTCAAGAAGACACTTCAATGCAAACCGCAGCCAAATCAAGTTCATGATCCAAAGACTATTATTAGGCAGCAAAAAGGTAATCAGAGAACAAAGTCAAGTAATCTTGAGAGTTCAAATACCAAAGATTTCATCCAAGGAAGCAAGAGGCACTTAAAAAATCCTCTAAGTTTTAGAGGGGACATTGACATCAGTAGTCCCATAACCCATGATAGCTCAAACATTGAAATTTGTCGATGTTGTCCTTGTCCTCAAAGCAATAGCGGCAATAAAGGTTCAGAAGGTTCTCATAGAACACGAAGAACGGATTCTGATGGTTGTTCAACATTGACATGTCATAAATGTGGCGAGAAATTGAAAAATCTTGATGCTGTAGAAGCACACCATATCTCCGAGCATTCAGTCACTGAACTTGAAGAAGATTCATCTAGACAGATTATAGAAACAATATGCGGAAGTGGAACAAGGTCTATTAATTCTGAAAGCATGTTGGGGCAGATTGATTGCATTTTAAAGGTTCTGAACGAATACAGAGAAAAGGTGAAGGGTAAGGCTGACAAGCTACAGAAGAAGCATCCACGTTGTGTGGTTGATGGAAATGAGCTTTTAAGGTTCCATGGCACAACCATTGCATGCTCTCTTGGCACAAACAGTTCTTATAGCCTGTGCACTTTAGACTATTGTGGCACATGTCAAATTCTGAGACATGGGTTCTCCACCAACAAGGAATTCCATGGTGCATTGGGGGTTTACACCACTTCCACAAGTGGGAAAGCCTTTGAATCCATTTCCATTATGACATCCCAAGAGAGACCATTTCCAAGAAAGTCTGTCATAGTGTGTAGAGTAATAGCTGGGAGAATTTATAGTCCTCTCGAAGAAATTGAAGAAAGGGTTGATTCAGGGTTTGATTCATTGGCAGAAAAAATAAGTGGTCATTCAGATGTTGAGGAACTCTACGTGTTAAATCCCAAAGCCCTGCTCCCTTGCTTTGTGGTAATCTACAAACAGCAAACAGCCAAGGTTAGAACTAGAAGGTTCAGCCCAAGCTTAAGGAAAAGTAGCTTTTAA 1089 0.405 MLEAWLSLKKTLQCKPQPNQVHDPKTIIRQQKGNQRTKSSNLESSNTKDFIQGSKRHLKNPLSFRGDIDISSPITHDSSNIEICRCCPCPQSNSGNKGSEGSHRTRRTDSDGCSTLTCHKCGEKLKNLDAVEAHHISEHSVTELEEDSSRQIIETICGSGTRSINSESMLGQIDCILKVLNEYREKVKGKADKLQKKHPRCVVDGNELLRFHGTTIACSLGTNSSYSLCTLDYCGTCQILRHGFSTNKEFHGALGVYTTSTSGKAFESISIMTSQERPFPRKSVIVCRVIAGRIYSPLEEIEERVDSGFDSLAEKISGHSDVEELYVLNPKALLPCFVVIYKQQTAKVRTRRFSPSLRKSSF 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00959 362 ProSitePatterns Zinc finger C2H2 type domain signature. 118 139 IPR013087 -
Pumo2g00959 362 MobiDBLite consensus disorder prediction 16 49 - -
Pumo2g00959 362 MobiDBLite consensus disorder prediction 16 54 - -
Pumo2g00959 362 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 341 - -
Pumo2g00959 362 Gene3D - 142 346 - -
Pumo2g00959 362 Coils Coil 177 197 - -
Pumo2g00959 362 SUPERFAMILY ADP-ribosylation 191 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00959 Pumo-Chr2 14343054 14345001 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00959 4 77 C2H2 Transcription Factor Family AT5G54630 34.694 2.15e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo2g00959 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00959 - - gmx:100792577 594.349