Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00946 ATGGCTGAGGAGTTTCAAGCTGCTATTTGTGGTGAAAGTTGGTGGAATATTAATCCAACAAGAAGTGTGTTTCCTCTTATGTCATCAACTTGTTCTGTGGCGGCAGCTGATGCAGGAAACTACAGCACTTGGCAAAGTACTGATTTCGTGGATTTGAAGGGCACAAGGTCTTGTGCTGAGGAGACTAATAATAACTTGGTTTCTTCTGATACTTGTATGAGTTTTCTTGATGCTGAGAAGCCACAGCAGAGTGACTCAGCTAGTGGAACTGGTAGCATCTTGATCGATTCCACCTTACAAATGATGGGTTTTGGCATGTCATCTTCAACTACATCGAATTGGAATCAATCTTTATTAGGGAGCGGTTTTCAATCTGTGCTTCAAGAAGAAACAGGCATAGGTGGTGGTTCTTCCAATAATTCACAAATCCAAAAAGAATGGAGTAGTCCAAAGAATTTCTCAGCTGGTGGTGGTAGCCAAGTTTCCACCGTTGATGCTTTCAAGCCAATGAACCAAGAATTTTCCTTGGATCAGCAGAGTCTGAATTCTGTTGTTACAAGCACTGGATCATTATCTGGTGGTTTCCCAATTGTTTCAGCCTCCTATGGTTTCCCTTCAACATTGATACAAAACTTATATGAGCCTGAGCCTCAACCACAACCACAGAACTCACTTTTCACCAACCCTTCCATGTCCTATTCATCATCTACCGAAAACTATGGGACATGTTCCAATGAACTGTCACCAACTTGGTCCAAAGTCTCTTCCCTTCTCAAACCCTCAATGCCAAAGCAACAGCTCAGTGGATTGCACTTTTCCAACAACACTCCTTTCTGGAATGCTTCGGCCGAAGCACTTAATGACATAAGAGCAGGTGTTTTTGCTTCATCACAAGCGCAATATCAAACGCCAAAATTTGAAGACAAAACCAACTGCCCCAATACTCTATTAAACAAGCTCAAGAGAGAAGAATCTCCAGACGCAGCGAAGAAAAATTCTTCTGAGCCTGCATTCAAGAGGCAAAGAATTGAAACTCCATCTCCATTACCAACTTTTAAGGTTAGGAAAGAAAAGCTGGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACGGACACCGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGACCAAGTCAGTGTTTTGAGCACTCCATATATGAAAAACAATGGAGCTCCCATTCAACACCAGCAGGATTGTGATAATCTGAAGGAGTCAGAAGGGCCAAAGCAAGATTTGAGAAGCCGAGGGCTGTGTTTGGTGCCGATTTCAAGCACGTTCCCGGTGGCTAATGAGACCACTGTTGATTTCTGGACACCTACATTTGGAGGCGCACTCATTGGCAGGTAG 1401 0.4368 MAEEFQAAICGESWWNINPTRSVFPLMSSTCSVAAADAGNYSTWQSTDFVDLKGTRSCAEETNNNLVSSDTCMSFLDAEKPQQSDSASGTGSILIDSTLQMMGFGMSSSTTSNWNQSLLGSGFQSVLQEETGIGGGSSNNSQIQKEWSSPKNFSAGGGSQVSTVDAFKPMNQEFSLDQQSLNSVVTSTGSLSGGFPIVSASYGFPSTLIQNLYEPEPQPQPQNSLFTNPSMSYSSSTENYGTCSNELSPTWSKVSSLLKPSMPKQQLSGLHFSNNTPFWNASAEALNDIRAGVFASSQAQYQTPKFEDKTNCPNTLLNKLKREESPDAAKKNSSEPAFKRQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVSVLSTPYMKNNGAPIQHQQDCDNLKESEGPKQDLRSRGLCLVPISSTFPVANETTVDFWTPTFGGALIGR 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00946 466 MobiDBLite consensus disorder prediction 320 347 - -
Pumo2g00946 466 MobiDBLite consensus disorder prediction 320 338 - -
Pumo2g00946 466 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 153 445 - -
Pumo2g00946 466 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 392 IPR011598 GO:0046983
Pumo2g00946 466 CDD bHLH_AtbHLH_like 349 400 IPR045239 -
Pumo2g00946 466 MobiDBLite consensus disorder prediction 129 160 - -
Pumo2g00946 466 FunFam Transcription factor bHLH123 family 353 416 - -
Pumo2g00946 466 Gene3D - 353 409 IPR036638 GO:0046983
Pumo2g00946 466 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 353 407 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00946 Pumo-Chr2 14150851 14154081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00946 1 461 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 39.706 7.24e-72 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00946 - - gmx:100794682 771.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01793 6 27676734 27678981 Pumo2g00946 2 14150851 14154081 PCT