Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00943 ATGGCGGCTGAGGCTCAGCTTCCCGACCACTTCAAATGTCCCATTTCCCTCGAAATCATGTCCGACCCGGTCATCCTCTCTTCCGGCCACACCTTCGACCGTTCCTCCATCCAACGCTGGCTCGACGCCGGCCACCGCACCTGCCCAATTACCAAACTACCCCTCCCAGAACACTCTTCTCTCATCCCCAACCACGCCCTCCGAAGCTTAATCTCCAACTACGCCCCCATCAACCCTCTCAACAATAATTCTCACTCACACTCACACTCACACCCTCAAACCCTAATCTCCACCCTCACCTCAAACTCCTCTCCTCTTCCATCTAAACTCGACGCGCTCCACCACCTCACCCGCCTCTCCCATTCCGACTCCCTCTTCCGCCGCCGCCTCTCCGACTCCCCCGCCCTCGTCCCCGCCCTCCTGGCGTGTCTCTCCGACTCCTCCCTCCGCCACCGCGCCCTCTCCCTCCTCCTCCACCTCTCCCTTGACGACGACGCCAAGGTCGGCCTCGTCGCCGAGGGCGTCCTCTCCCCTCTCGTCTCCGTCCTCCTCTCCGCCCCCTCCGACTGCCGCGCCCTGGCCGCCACCCTCCTCACCAGCCTCGCCGTCCTCCACGTCAACAAGGCCACCATCGGAGCCTTCCCGCGCGCCATCCCCGCCCTCGTCACCCTCCTCCGCGACGGCAAAGGCAGAGAGCGCAAAGAAGCCGCCACCGCGCTCTACGCCCTCTGCTCCTTCCCCGACAACCGCCCAAGAGCCGTGGAGTGCGGCGCCGTTCCCGTTCTGCTTCGGAGCGCCGATTCGGGCCTTGAGAGGAGCGTTGAGGTTATCGGGGTCTTGGCCAAGTCTAAGGAGGGGAGGGAGCACATGGAACGGTTTCGTGGGTGCGTGCAGATTCTTACGCGCGTCTTGACGAATGGAAGCTCCAGGGGTGTTCAGTACGCTCTTATGGCTCTCTATTCACTCTGTTGTCACAGTGAGGGAACTGTTGTCGACGCTTTAAGAAATGAGGTTTTGGAAATTTGTCAAGGCTTGGTGGAAGATGATAATGCCAAGGTCAGAAGGAATTCCTCCTGTTTAGTTCAGCTTCTCCGTGGAAACACCCATCGATTGAGTTGA 1119 0.6059 MAAEAQLPDHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPEHSSLIPNHALRSLISNYAPINPLNNNSHSHSHSHPQTLISTLTSNSSPLPSKLDALHHLTRLSHSDSLFRRRLSDSPALVPALLACLSDSSLRHRALSLLLHLSLDDDAKVGLVAEGVLSPLVSVLLSAPSDCRALAATLLTSLAVLHVNKATIGAFPRAIPALVTLLRDGKGRERKEAATALYALCSFPDNRPRAVECGAVPVLLRSADSGLERSVEVIGVLAKSKEGREHMERFRGCVQILTRVLTNGSSRGVQYALMALYSLCCHSEGTVVDALRNEVLEICQGLVEDDNAKVRRNSSCLVQLLRGNTHRLS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00943 372 SUPERFAMILY RING/U-box 5 75 - -
Pumo2g00943 372 SUPERFAMILY ARM repeat 93 362 IPR016024 -
Pumo2g00943 372 ProSiteProfiles U-box domain profile. 6 81 IPR003613 GO:0004842|GO:0016567
Pumo2g00943 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 78 IPR013083 -
Pumo2g00943 372 FunFam RING-type E3 ubiquitin transferase 6 78 - -
Pumo2g00943 372 Pfam U-box domain 8 74 IPR003613 GO:0004842|GO:0016567
Pumo2g00943 372 SMART Ubox_2 10 74 IPR003613 GO:0004842|GO:0016567
Pumo2g00943 372 SMART arm_5 283 324 IPR000225 GO:0005515
Pumo2g00943 372 SMART arm_5 163 203 IPR000225 GO:0005515
Pumo2g00943 372 SMART arm_5 207 245 IPR000225 GO:0005515
Pumo2g00943 372 CDD RING-Ubox_PUB 8 61 IPR045210 -
Pumo2g00943 372 FunFam RING-type E3 ubiquitin transferase 91 366 - -
Pumo2g00943 372 Gene3D - 90 372 IPR011989 -
Pumo2g00943 372 PANTHER U BOX DOMAIN-CONTAINING 7 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00943 Pumo-Chr2 14124380 14126098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00943 7 366 U-box Gene Family AT4G21350 57.766 5.42e-136 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00943 - - gmx:100796272 582.408