Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00920 ATGGGGAGAGCACCTTGTTGTGACAAGAATGGCCTCAAGAAAGGGCCATGGACAACCGAGGAGGACCAGAAACTCATTGATTACATTCAGAAACATGGATATGGCAATTGGAGAACACTCCCAAAAAATGCTGGGTTGCAAAGATGTGGAAAGAGTTGCCGTCTCCGTTGGACAAACTATCTCCGACCAGATATAAAGCGAGGTCGGTTTTCATTTGAAGAGGAAGAGACAATAATTCAGCTACATAGCATTCTTGGCAACAAGTGGTCTGCGATTGCATCTCGCTTACCAGGAAGGACAGATAATGAAATAAAAAACTACTGGAACACTCACATTAGAAAAAGGCTTCTGAGGATGGGAATTGACCCTGTGACACACAGTCCTCGACTTGATCTATTGGACCTCTCTTCCATTCTAAACGCTTCTTTCTATGGCTCATCACAAATGAACATCCAAAGGCTCCTTGGCATGCACCAGTACATGGTGAACCCAGAGCTTTTAAAATTGGCTTCTTCACTCATCTCCACCTCACAGCAACACAATGACCTTGACATGTGTGCTCAAAAAGGTCAACAAAACCAGCTTTGCGATCCACAAATTCAGAACCATGTTCCACACTTTGTCCAATTTCAAGATCCAGTTCAAGAAGTGCCTGCATGCAGCACCATGTTCAGCACTACTCCTTGTGTTTCATTGCCTCTAACTCAACCACATTTGGTTGAGCCATCATCAACTTTCACAGACTTCAGTAGTTACCAACATCATTTTCATGATGATCAGCTTAGTGATTGGCACAAAGATGGGATTGCCTTAAGCACCTTAACAGATGACTATATCCCTCAATTATCAAGCTATAATTATTATAGTTCTGATAGTCAAAATCTCATGTATCCTCAATTGTCGGAACCTTCAACTTTTCATTCCAATAACAGCAATCAGAACTTCAGCTTCGCTTCAGTTCTATCGACACCTTCGTCAAGCCCCACACCGCTGAATTCGAACTCCACGATAATCAATGGGAGCAACACAGAAGACGAGAGAGATCAAAGCTATGACAGTAGTAACATGTTGAAATTTGAAATCCCAGATATTTTAGATGTGAATGAGTTCATGTAA 1116 0.4203 MGRAPCCDKNGLKKGPWTTEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILNASFYGSSQMNIQRLLGMHQYMVNPELLKLASSLISTSQQHNDLDMCAQKGQQNQLCDPQIQNHVPHFVQFQDPVQEVPACSTMFSTTPCVSLPLTQPHLVEPSSTFTDFSSYQHHFHDDQLSDWHKDGIALSTLTDDYIPQLSSYNYYSSDSQNLMYPQLSEPSTFHSNNSNQNFSFASVLSTPSSSPTPLNSNSTIINGSNTEDERDQSYDSSNMLKFEIPDILDVNEFM 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00920 371 CDD SANT 69 112 IPR001005 -
Pumo2g00920 371 MobiDBLite consensus disorder prediction 319 355 - -
Pumo2g00920 371 CDD SANT 16 61 IPR001005 -
Pumo2g00920 371 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pumo2g00920 371 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo2g00920 371 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo2g00920 371 Gene3D - 13 66 - -
Pumo2g00920 371 SMART sant 13 63 IPR001005 -
Pumo2g00920 371 SMART sant 66 114 IPR001005 -
Pumo2g00920 371 MobiDBLite consensus disorder prediction 319 344 - -
Pumo2g00920 371 FunFam Transcription factor MYB39 69 130 - -
Pumo2g00920 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo2g00920 371 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 282 - -
Pumo2g00920 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo2g00920 371 FunFam MYB-related transcription factor 13 66 - -
Pumo2g00920 371 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo2g00920 371 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo2g00920 371 Gene3D - 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00920 Pumo-Chr2 13846031 13847823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00920 1 371 MYB Transcription Factor Family AT4G21440 54.569 2.82e-116 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo2g00920 Myb_DNA-binding 6.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00920 K09422 - gmx:778071 646.736