Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00906 ATGGCTTCGGCTTCGTCTTCGTCCTCCAAACTATGCTTCAATTCTGACTGCAAGGAATTGAAGCCAGAAAGACCTAAGAAAGGCTGGAGACTCCGTAGCGGAGAACAAGCCGAGCTTTGTGATCGATGCGGCTCTGCTTTTGAAGAAGGGAGGTTCTGTGAGATTTTTCACTCAAATGCTTCTGGTTGGAGGAGTTGTGAGACTTGTCGAAAGCGGATTCATTGTGGGTGTATTGTTTCAAGTGGTGCTTTTATGTTGTTGGATCCTGGAGGAATTGAATGTTATGCATGTGCCCGCAAAAATATTATTTTGCCATCTAACCTGCCGTGGCCACAATCTTTTCCCCTTCAAAATCGTTTATCGGATAGACTTAGAGACCTATCTGCCAAAGGTTGGAGTCAGCTAGCTGGATCAGGTCCTGTACCATGGAAGCAAGCACCCAGTCTGTTCAATTCTGCTTCTTCATCTGACCTGATCCCAGAAGTGCCTTCTTTAGTTGAATTATCCAATAGCTTTGACAAAATGTATTGCAATGAAAGGTTACCTTCCTCAGCCTTGGAAAAGAAAAATGAGGATTTGTCTGGAATATCAGTTAATTGGAACGTCAAGCTTGGCTCACGGGAGATGATGCTTATGAATGGAATGAGGAATGAGGACAAATCAAGTTCATGTTTAAATATGTGTCAACAGCCTCCTCTGAAGGAAGAGTCATCTCCTCAACCATTTGGTTTGCCTGTACCTAATTCATGCCAAAATGAAAGAAATGGTCAACTTGGGGTAACTGGAAGTCATTCACAACAAACTCCACCACCTCCAGGAAAGCAATTTAATGGCACTATGCATTTAGCACCTGATTCATCAGGTGAGGCTCAGGTTCGCAATGGGCGGCCTCGAGCAGATGCCCGAGGAAGAAACCAGTTACTGCCACGGTACTGGCCAAGGTGTACAGATCTGGAGCTACAGCAAATTTCTATAGATTCAAATTCTGTAATTACTCCCTTGTTTCAGAAAACCTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTTTAGTGCTACCCAAGAAGTGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCTGAAGGATTGCCACTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAATTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTGCAGGCTGGTGATACTGTAACATTTAGCCGGTTGGAACCAGAGGGAAGGTTGGTTATGGGATTTAGAAAGGCTTCAAGTGCCGTGCCATCCGATCAGGACAATGAGACCAATAAGACTGGAAATGGATTTTCTGCACATGGTGAAGTTGAATTGGCAGATCCTAATTCATGGTCTAAAGTTGATAAGTCAGGATACATAGCAAAAGAAGCACTGGGGAGCAAATCATTAATCTCTAGAAAAAGAAAGAGCAGTATATTGGGCTCAAAGAGTAAACGTCTAAGAATTGAAAATGAGGATTTAATAGAGCTGAAGATTACATGGCAAGAAGCTCAAGGTCTGCTCCGGCCCCCTCCTAGCCACATTCCAAGCATTGTGGTGATTGAAGGTTTTGAATTTGAGGAATATGAGGAAGCTCCAGTGCTTGGGAAGCCAACAATTTTTACCAGTGATAATGTGGGTGAAAAGATCCAGTGGGCTCAATGTGAAGATTGTTTCAAGTGGCGCAAATTGCCAGCAAGTGCGCTTCTTCCATCAAAATGGACGTGTTCTGATAATTTGTGGGATCCAGAAAGATCTTCTTGTTCAGCTGCACAAGAGCTGACAGCAGAGCAACTTGAGAATTTGCTACCTCCTTGTAATTCAGCTGTTCCCAAGAAAATGAAGGCCGCCAAACAGGATCCTGATAATGCTGAAGCTTTGGAGGGACTTGACACCCTTGCAAATCTAGCTATCCTGGGAGAGGGTGAGGCACTCCCAGCATCCGCCCAGGCCACAACTAAACATCCACGTCATAGACCTGGCTGCTCTTGCATTGTTTGCATTCAGCCTCCCAGTGGAAAGGGCCCCAAGCATAAGCAGACATGCACATGTAATGTATGCTTAACAGTGAAGCGACGTTTCCGTACCCTTATGTTAAGGCGTGAGAAGAAACAATCAGAAAAAGAAGCAGAGACAACTCGTAAAAAGCAACAGCAACAACATCCTCAACCATTACCTTCATCTGAAATTTTGCTTGATGAAGATTCCTTGCCCTGTAGTAACACAGGTGATAGTAGCCCGAACCAGAACAAAGAGGGTAATGATGGTTCTGATGATGATCCTAACCGAATAAAATCATCTGCTTCACCATTCAAAGGCCAAATTGACCTCAATATCCAGCCAGAGCGAGAAGAAGAATTATCACCTGGTTCAGATTCTGGCGGCATGATGAAGTTGCTCCATGATGCTACCGAGCGGTATCTCAAGCAGCAGACTGTGAACAATGGTACTGGAGATTCATCAGGCAGTCAGTCACAGCTGGTAGGAGATGCAATGAGGGAAGATAAACTTAGCAATGGTGTTGCCCATGGCAGTAGTAGTCATAATACTGATAAGGAACATGCCCAATCTTTGTCTATGAATGTGTGA 2640 0.4436 MASASSSSSKLCFNSDCKELKPERPKKGWRLRSGEQAELCDRCGSAFEEGRFCEIFHSNASGWRSCETCRKRIHCGCIVSSGAFMLLDPGGIECYACARKNIILPSNLPWPQSFPLQNRLSDRLRDLSAKGWSQLAGSGPVPWKQAPSLFNSASSSDLIPEVPSLVELSNSFDKMYCNERLPSSALEKKNEDLSGISVNWNVKLGSREMMLMNGMRNEDKSSSCLNMCQQPPLKEESSPQPFGLPVPNSCQNERNGQLGVTGSHSQQTPPPPGKQFNGTMHLAPDSSGEAQVRNGRPRADARGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAVPSDQDNETNKTGNGFSAHGEVELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSSILGSKSKRLRIENEDLIELKITWQEAQGLLRPPPSHIPSIVVIEGFEFEEYEEAPVLGKPTIFTSDNVGEKIQWAQCEDCFKWRKLPASALLPSKWTCSDNLWDPERSSCSAAQELTAEQLENLLPPCNSAVPKKMKAAKQDPDNAEALEGLDTLANLAILGEGEALPASAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEKEAETTRKKQQQQHPQPLPSSEILLDEDSLPCSNTGDSSPNQNKEGNDGSDDDPNRIKSSASPFKGQIDLNIQPEREEELSPGSDSGGMMKLLHDATERYLKQQTVNNGTGDSSGSQSQLVGDAMREDKLSNGVAHGSSSHNTDKEHAQSLSMNV 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00906 879 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 9 838 - -
Pumo2g00906 879 MobiDBLite consensus disorder prediction 229 284 - -
Pumo2g00906 879 Coils Coil 717 737 - -
Pumo2g00906 879 MobiDBLite consensus disorder prediction 717 733 - -
Pumo2g00906 879 ProSiteProfiles Zinc finger CW-type profile. 563 613 IPR011124 GO:0008270
Pumo2g00906 879 Pfam B3 DNA binding domain 335 434 IPR003340 GO:0003677
Pumo2g00906 879 Gene3D - 567 620 - -
Pumo2g00906 879 MobiDBLite consensus disorder prediction 229 297 - -
Pumo2g00906 879 FunFam B3 domain-containing transcription repressor VAL1 313 440 - -
Pumo2g00906 879 SUPERFAMILY DNA-binding pseudobarrel domain 332 434 IPR015300 -
Pumo2g00906 879 MobiDBLite consensus disorder prediction 857 879 - -
Pumo2g00906 879 Pfam CW-type Zinc Finger 568 610 IPR011124 GO:0008270
Pumo2g00906 879 MobiDBLite consensus disorder prediction 824 845 - -
Pumo2g00906 879 MobiDBLite consensus disorder prediction 438 454 - -
Pumo2g00906 879 MobiDBLite consensus disorder prediction 435 459 - -
Pumo2g00906 879 CDD B3_DNA 333 434 IPR003340 GO:0003677
Pumo2g00906 879 Gene3D - 313 439 IPR015300 -
Pumo2g00906 879 SMART B3_2 335 436 IPR003340 GO:0003677
Pumo2g00906 879 MobiDBLite consensus disorder prediction 751 769 - -
Pumo2g00906 879 ProSiteProfiles B3 DNA-binding domain profile. 335 436 IPR003340 GO:0003677
Pumo2g00906 879 MobiDBLite consensus disorder prediction 717 879 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00906 Pumo-Chr2 13699725 13709964 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00906 265 871 B3 DNA Binding Superfamily AT4G32010 46.753 2.01e-168 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo2g00906 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00906 K09287 - gmx:100807252 1701.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00906 2 13699725 13709964 Pumo2g00906 2 13699725 13709964 ECH