Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00879 ATGATGGCGAACGGGGGATTTGATTACTCGTACCTCTTGGACGACGACGGAGACGTCGCCGATGACGATAAGCTCTGCATCGATCTGGATACCGTTATGAGCGTTCTCGACGAGGATACCGATCCTTCCGAGAGTAGTCCTGAGGATTTTTCATTGAAAAATATTTCTCCTGGTGAATCTGGCATCCATGATAATTTTCTACTTCAAAATGGGAATTCTGTGCTTGAACGTGAACATGAAAACCAGGGACCTTCATCACAGACTTTTTCTTCCCCAAATGCTCTTGCTGGTGGTTACAGGGACTCCTCTGTGGTTGAAAGTGATGAAATTTGCTTCACAGAAATGACAGGAGTTTCTAATTGTGAGGTGCCTGCTTACAATGCAGACAGAAGGTTCCCTGATCCTGAGGCGAATTCAAGCAACGTAGCTGTCTGTGGAGATAATTTGAATCTGACTCTGTGGAAATGTGAAAATGACAGCCAAATCAAGCATACAGGATATGATGCACAATCTGAATATGCTTCACATGGCTCTATCATTGAGAATATTGATGTAAAATTTGAAGATTATGAAACCTATATGAAAGACATTATTGGATTTTCTGGTAAACAGGAAAATGACTCGTGTACATCTTTTGAAATGTCGTTTGTGGATGCTGATAGATCATCTTCACATGTTGCAACTTCAACTGAATCTTCTATTTGTCAAGGTTCCAATGTTCCCAATGATTTTAGTGACTATTATCCATCTTTGAATTATTACCAAGGTATGGATGATAGAGCTGTCGTTGCCAACACTTCTGGTTGTTTGTCTAATGGTGTTTATCCTCATGTGTGGAAAAATGAAGAAATGACGAGGAACATGAAGGTTGCTAAAATGGAGTTATTTGCTGATACAAGTAGTGGCATACATTCCAGCATTAATGGTGGGATATCTTTACATGATACTCAATATATGTTTGCAGATAGTAAATATGCATCATCTTTTCCTGGTAATGTTCTCTTTGAAGACAATGCATCGATGCAACTTTCAACTCGTGCTTCATATATTTCAAGTGAAGGTCAATCACTTAATGTCAAAGCCAAAAGAGACGAACAGATTATGCCTTACCAAAACTCTCTTCACAGTGATGATGTTGAGTTCAATGTAGGTCAAGAGATGAAACAACTGCCTGGTATTTTCCCTGCTGTTGGATGTCAGGGTAATGATTTATTCAAGTGCGAGGATAGTGTTACAATTGCAACAATTCACAAAGCCAAATATTATCAAGATGGTATTGATGGAGCTGCCAATAACTTTCCAGGAAACATAGGGAATTTGAATTTAAAACCATTAGACAAATCTTTGTATAATGCCCAGACATCAATTGCCAGTGGGAAGCAGTATAGTTGTGTTATGAGTGAAGGAGAGGGCAAAGCAATTGAACATAGAAGTATTGAATCTCAACTTTCAAAAGGAAGTATTGAGAGATCCAATATTGAGGATGATTCTGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTATAAGTCGACCAGTAGAGCTTGGGAATTCCCTTAATACATCACAATCTTCTAGAGGTGGTTATACTCATTCTTATATGGTGGGAAGTGTGAGGCCCAAGGCGCGTGACGAGCAGTACATATTACGAGCTGCATTGCAGGATCTATCCCAACCGAAGTCAGAGGTTAGTCCACCAGATGGACTGCTGGCAGTTCCTCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCAAGTTTATACTGTTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGGAAAACAGTGTCGACCATTGCTTTAATATTAACGGAAAGACCTCCATTGCTGAATAAATGCAACAATGCACAAAAAAGTGAATTAGAAACTTTGAATCTGGATGCAGATGATGATCAGCTTCCTGAGAATGGTGTGGTGAGGAACGAATCTAATATGTGGCAGGATTTGTCTAGTAGAAATCCAAACAAGAACATGAATTTGTTAGTGCATGCAAAGGGAAGGCCATCTGCAGGAACCCTTATTGTTTGTCCAACTAGTGTCCTGCGACAATGGGCTGAGGAGTTGCACAATAAGGTAACCTGCAAAGCAAATCTCTCTGTGCTAGTGTATCATGGAAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAGTATGATGTTGTTCTGACAACTTATTCAATTGTCAGCATGGAGGTTCCTAAGCAGCCTCTAGTTGACAAAGATGATGAAGAAAAAGGAACTTATGATGATCATGCAGTATCAAGTAAGAAAAGGAAAAGCCCTCCTAGTTCTAAAAGTGGCAAGAAGGGATTGGACAGTGCGATGCTTGAGGCTGTTGCTCGTCCTCTTGCAAAAGTGGCTTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGCTGGGGTCTTCGAGCCAAGCGTAGATGGTGCTTGTCAGGGACTCCTATCCAGAATGCAATTGATGATCTCTATAGTTACTTTAGATTTTTAAGATATGATCCTTATGCTGTGTACACATCATTCTGTTCCACAATTAAGATCCCTATCAGCAGAAGTCCATCAAAAGGATATAGAAAGCTACAAGCTGTCTTAAAAACAATAATGTTACGTCGGACAAAAGGCACACTTCTTGATGGGGAGCCTATCATTTCCTTGCCACCTAAATCTGTAGAGTTGAAAAAAGTGGAATTTTCACAGGAAGAACGTGATTTCTATTCCAGACTAGAGGCTGATTCCCGAGCACAGTTTCAGGAATATGCTGACGCTGGAACCGTGAAGCAAAACTATGTTAACATTTTGTTGATGCTTTTGCGCCTTAGACAAGCATGTGATCATCCTCTGCTTGTCAAGCGTTACAATTCTAACTCTCTCTGGAAATCTTCAGTTGAGATGGCAAAGAAGCTTCCTCAGGAAAAACGATTATCTCTTCTAAAATGTTTAGAGGCATCCTTGGCCCTCTGTGGTATCTGTAATGATCCTCCTGAGGATGCTGTTGTTTCAGTTTGTGGTCATGTTTTTTGTAACCAGTGCATTTGTGAACATCTTACTGGTGATGACAATCAGTGCCCAGCTACAAACTGCAAAACTCGACTAAGCATGTCTTCAGTGTTTTCCAAAGTTACACTGAATAGTTCTTTTTCTGATCAGGCTTGTGATAATTTGCCTGATTACTCTGGTTGTGAAGTTGAGGAATCTGAGTTTTGTTCTCAGACTCAGCCATACGATTCTTCAAAAATTAAGGCTGCACTTCAGGTGTTGCACTCATTGTCTAAACCACAATGCTGTGCTTCCCAAAACAATTCTGTGCAGAGCACTTCTGGGGAAAGTACTGATGACCTTGGTAGCTCATCTTGTGCTGACAGAATGAAATCCTTAAATGAAATTCCTGAGAGTCAAAATGTGTTTGAGGAGAGAAACTCTAATAATTCAGTTGGTGTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACAAGGATGCTAGATTTACTTGAAGCATGTCTTAAGAATTCTTCGATCCAGTATAGAAGACTGGATGGAACAATGTCAGTCACTGCAAGAGATAAAGCTGTTAAAGATTTTAACACTCTCCCTGAGGTTTCAGTTATGATCATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAATATGGTCGCTGCCTGCCATGTTCTTATGCTAGATCTATGGTGGAATCCTACAACTGAAGATCAGGCAATAGACCGAGCACATCGAATTGGACAGACTCGTCCTGTCACAGTTTTACGGTTAACTGTTAGAGATACAGTTGAAGATCGTATTTTAGCTCTGCAGCAAAAAAAGCGAAAAATGGTTGCATCTGCCTTCGGAGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTTACAGTGGATGATCTAAAATACTTGTTCATGATGTGA 3987 0.4063 MMANGGFDYSYLLDDDGDVADDDKLCIDLDTVMSVLDEDTDPSESSPEDFSLKNISPGESGIHDNFLLQNGNSVLEREHENQGPSSQTFSSPNALAGGYRDSSVVESDEICFTEMTGVSNCEVPAYNADRRFPDPEANSSNVAVCGDNLNLTLWKCENDSQIKHTGYDAQSEYASHGSIIENIDVKFEDYETYMKDIIGFSGKQENDSCTSFEMSFVDADRSSSHVATSTESSICQGSNVPNDFSDYYPSLNYYQGMDDRAVVANTSGCLSNGVYPHVWKNEEMTRNMKVAKMELFADTSSGIHSSINGGISLHDTQYMFADSKYASSFPGNVLFEDNASMQLSTRASYISSEGQSLNVKAKRDEQIMPYQNSLHSDDVEFNVGQEMKQLPGIFPAVGCQGNDLFKCEDSVTIATIHKAKYYQDGIDGAANNFPGNIGNLNLKPLDKSLYNAQTSIASGKQYSCVMSEGEGKAIEHRSIESQLSKGSIERSNIEDDSDVCIIEDISHPAPISRPVELGNSLNTSQSSRGGYTHSYMVGSVRPKARDEQYILRAALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILTERPPLLNKCNNAQKSELETLNLDADDDQLPENGVVRNESNMWQDLSSRNPNKNMNLLVHAKGRPSAGTLIVCPTSVLRQWAEELHNKVTCKANLSVLVYHGSNRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDEEKGTYDDHAVSSKKRKSPPSSKSGKKGLDSAMLEAVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISRSPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLPQEKRLSLLKCLEASLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTGDDNQCPATNCKTRLSMSSVFSKVTLNSSFSDQACDNLPDYSGCEVEESEFCSQTQPYDSSKIKAALQVLHSLSKPQCCASQNNSVQSTSGESTDDLGSSSCADRMKSLNEIPESQNVFEERNSNNSVGVGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVTARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM 1328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00879 1328 CDD DEXDc_SHPRH-like 576 897 - -
Pumo2g00879 1328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 561 897 IPR027417 -
Pumo2g00879 1328 MobiDBLite consensus disorder prediction 1124 1143 - -
Pumo2g00879 1328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 905 1327 IPR027417 -
Pumo2g00879 1328 CDD SF2_C_SNF 1173 1280 - -
Pumo2g00879 1328 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 669 757 - -
Pumo2g00879 1328 Pfam Helicase conserved C-terminal domain 1171 1270 IPR001650 -
Pumo2g00879 1328 ProSitePatterns Zinc finger RING-type signature. 1028 1037 IPR017907 -
Pumo2g00879 1328 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1153 1323 IPR001650 -
Pumo2g00879 1328 ProSiteProfiles Zinc finger RING-type profile. 1013 1052 IPR001841 -
Pumo2g00879 1328 SMART ultradead3 572 874 IPR014001 -
Pumo2g00879 1328 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 591 859 IPR014001 -
Pumo2g00879 1328 MobiDBLite consensus disorder prediction 752 773 - -
Pumo2g00879 1328 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 368 1327 - -
Pumo2g00879 1328 SUPERFAMILY RING/U-box 1010 1062 - -
Pumo2g00879 1328 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 779 909 - -
Pumo2g00879 1328 Gene3D - 545 640 IPR038718 -
Pumo2g00879 1328 SMART helicmild6 1187 1270 IPR001650 -
Pumo2g00879 1328 Gene3D - 787 898 IPR038718 -
Pumo2g00879 1328 Gene3D - 672 761 IPR038718 -
Pumo2g00879 1328 MobiDBLite consensus disorder prediction 752 787 - -
Pumo2g00879 1328 SMART ring_2 1013 1051 IPR001841 -
Pumo2g00879 1328 Pfam SNF2-related domain 596 974 IPR000330 GO:0005524|GO:0140658
Pumo2g00879 1328 Gene3D - 912 1327 IPR027417 -
Pumo2g00879 1328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1006 1064 IPR013083 -
Pumo2g00879 1328 Pfam Zinc finger, C3HC4 type (RING finger) 1013 1049 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00879 Pumo-Chr2 13488320 13497115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00879 466 1327 RAD5 or RAD16-like Gene Family AT1G61140 60.650 0.0 993
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo2g00879 SNF2_N 1.9e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00879 - - gmx:100805307 2214.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01855 6 28613845 28622461 Pumo2g00879 2 13488320 13497115 PCT