Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00878 ATGGACAATATCTACACTTTGGTTTTTATACTTATTCTATCTTTGAAGGCTAGTACTGTTTGTTCCAGAGATAGACAATGGGGTGGTGTGAGGAGAATATTGAGCTCTGATGGGGGTAATAATAATGGTGATCATCTTGTGACTAACTTGCCTGGCCAGCCTCCTGTAGATTTCCAGCACTACGCTGGATATGTCACAGTCAACGAAACCAATGGACGAGCACTCTTTTACTGGTTCTATGAGGCCATGACCAAGCCTCAAGAGAAACCATTGGTGCTGTGGCTTAATGGAGGTCCCGGGTGCTCTTCTGTGGGATATGGAGCAACACAGGAGATTGGCCCATTTTTAGTGGACACCGATGGCAAGAGCCTTAAATTTAATAATTTCTCATGGAACAAAGAGGCCAACATGTTATTCCTGGAATCTCCTGTTGGGGTTGGCTTTTCCTATTCAAATACAACCAGCGAATATGCACAACTGGGAGATGACTTCACAGCTAATGATGCTTACACTTTTCTGCACAATTGGTTCCTCAAGTTTCCATCATATAAAACAAGGACATTTTACATAGCAGGAGAGAGCTATGCGGGAAAGTATGTACCGGAGCTGGCTGAACTCATCCACGATAGAAACAAGGACCCTTCCCTTCACATTGATCTCAAGGGAATTTTGCTGGGCAACCCTGAAACATCTGATGCTGAGGACTGGTCAGGTATGGTTGATTATGCTTGGAGCCATGCAGTGATATCTGATGAAACTTACAAAACAATCAAAGCAAGCTGTGACTTCAATAGCAGTGATCCGTGGAGTAACAAAGATTGTAGTCAAGGAGTGGATGAAACACTCAAACAGTACAATGAAATTGATATCTACAGCCTCTACACCTCTGTCTGCTTCGCTAGTACAGCACGTTCAAACGATCAATCGACGCAAATGGTGATGAATCGCTCATCTAAAATGATGCCTCGGATCATGGGAGGTTATGACCCATGTTTGGATGACTATGCTAAAACTTTTTATAATAGACCAGATGTTCAGAAGGCACTCCATGCCAGTGATGGTCACAATCTGAGGAATTGGAGTATTTGCAATGAAAACATGTTCAAGGGCTGGGCACAATCAAAGCCTTCTGTTATCCCAATCTACAAGAAGCTTATTTCAGCAGGACTTAGGATTTGGGTTTACAGTGGAGACACTGATGGTAGGGTGCCAGTGCTGTCAACAAGATACAGCTTAAGTATTCTAGGTTTGCCTATCACTAAGAGATGGAGGCCTTGGTTAGTGGGTGGTATCAAGAATACAAGGGGCTTACATTTGCGACATTTCGGGGAGCTGGCCATGCAGTGCCTTGTTTCAAACCAAGCAACTCATTGA 1374 0.436 MDNIYTLVFILILSLKASTVCSRDRQWGGVRRILSSDGGNNNGDHLVTNLPGQPPVDFQHYAGYVTVNETNGRALFYWFYEAMTKPQEKPLVLWLNGGPGCSSVGYGATQEIGPFLVDTDGKSLKFNNFSWNKEANMLFLESPVGVGFSYSNTTSEYAQLGDDFTANDAYTFLHNWFLKFPSYKTRTFYIAGESYAGKYVPELAELIHDRNKDPSLHIDLKGILLGNPETSDAEDWSGMVDYAWSHAVISDETYKTIKASCDFNSSDPWSNKDCSQGVDETLKQYNEIDIYSLYTSVCFASTARSNDQSTQMVMNRSSKMMPRIMGGYDPCLDDYAKTFYNRPDVQKALHASDGHNLRNWSICNENMFKGWAQSKPSVIPIYKKLISAGLRIWVYSGDTDGRVPVLSTRYSLSILGLPITKRWRPWLVGGIKNTRGLHLRHFGELAMQCLVSNQATH 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00878 457 FunFam Carboxypeptidase 41 300 - -
Pumo2g00878 457 PRINTS Carboxypeptidase C serine protease (S10) family signature 176 201 IPR001563 GO:0004185|GO:0006508
Pumo2g00878 457 PRINTS Carboxypeptidase C serine protease (S10) family signature 140 150 IPR001563 GO:0004185|GO:0006508
Pumo2g00878 457 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 139 IPR001563 GO:0004185|GO:0006508
Pumo2g00878 457 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 46 430 IPR001563 GO:0004185|GO:0006508
Pumo2g00878 457 ProSitePatterns Serine carboxypeptidases, serine active site. 190 197 IPR018202 GO:0004185
Pumo2g00878 457 Gene3D alpha/beta hydrolase 42 300 IPR029058 -
Pumo2g00878 457 SUPERFAMILY alpha/beta-Hydrolases 43 434 IPR029058 -
Pumo2g00878 457 Pfam Serine carboxypeptidase 51 428 IPR001563 GO:0004185|GO:0006508
Pumo2g00878 457 Gene3D - 378 457 - -
Pumo2g00878 457 Gene3D - 331 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00878 Pumo-Chr2 13462168 13466860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00878 336 428 Calmodulin-binding Proteins AT2G22960 34.409 1.88e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00878 K16297 - gmx:100819700 836.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01857 6 28655329 28659670 Pumo2g00878 2 13462168 13466860 PCT