Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00874 ATGGATTCATCTTCAGGATCTCAGTTATCTCAGCACCCACAACTCCCACCAGGGTTTCGCTTCCACCCCACAGATGAGGAACTAGTGGTTCACTACCTCAAGAGAAAAGCAGACTCTGTTCCTCTTCCTGTTGCCATCATCGCCGAGGTTGATCTCTACAAGTTCAACCCGTGGGAACTCCCAAGTAAAGCAACGTTTGGTGAGCAAGAGTGGTACTTTTTCAGCCCAAGGGATAGGAAATACCCAAATGGGGCAAGGCCTAACAGGGCTGCATCTTCTGGGTATTGGAAAGCAACCGGAACTGACAAGCCCATACTTGCATCTAATGGCCACCACAAAGTTGGAGTCAAGAAAGCCCTTGTTTTCTATGGTGGAAAGCCTCCAAAAGGGGTTAAAACCAATTGGATCATGCACGAGTACAGGCTTGTTGACAGTTCCTCAAATTCTAGCTCAAAGCCACCTTCTCTTGCTGCAGATCGTGCACTTAGTACCAAGAAAAACTCCTTGAGGCTTGATGATTGGGTTTTGTGCCGAATATACAAGAAAAGCAACAGTACCATCCTGCCAAGGTTACCTTTGATGGAGCAGAGTAAGGAGCTTTCTACGGACAGTACTATGCTACCAATGATGTCAACTTCGTCAATGGCTAATAATAATAATAATACTCCTCAGAATTCCAAACCCGCGTCTTCGAGGAGCGCAAGTTATGGACCCCAGCTGGGACTAGAAAATGAAGATAACTTCTTTGATGGAATCTTAGGAGTTGATCATCAGAGTTGCATGCGGCAAGATGTTTGTGATTCCCAACAAGTGTCTTCAAAGGGAAACTTCCCTATGAAACGAGCACTCTCGTCACAGTTTTGGAATGACACAGCCACAGGGTCATCCCCTTCAAGCAGGCAATTCCATTGTGATCTCAATGCTGCAGGAAGCAGCACTGTTGAGGAAGACAATTCCTTCGTTTCTCTGCTTAGCCACCTTCCACAGAACACAACGTTTCACCAAAATGCGCTTCTTGGCCCTGTTGGTAATGGTGTATTGAGGCAACAGTACTTTCAACTTCCAAGCGTGAATTGGAATGCATAG 1086 0.4604 MDSSSGSQLSQHPQLPPGFRFHPTDEELVVHYLKRKADSVPLPVAIIAEVDLYKFNPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAASSGYWKATGTDKPILASNGHHKVGVKKALVFYGGKPPKGVKTNWIMHEYRLVDSSSNSSSKPPSLAADRALSTKKNSLRLDDWVLCRIYKKSNSTILPRLPLMEQSKELSTDSTMLPMMSTSSMANNNNNTPQNSKPASSRSASYGPQLGLENEDNFFDGILGVDHQSCMRQDVCDSQQVSSKGNFPMKRALSSQFWNDTATGSSPSSRQFHCDLNAAGSSTVEEDNSFVSLLSHLPQNTTFHQNALLGPVGNGVLRQQYFQLPSVNWNA 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00874 361 Gene3D NAC domain 24 187 IPR036093 GO:0003677|GO:0006355
Pumo2g00874 361 MobiDBLite consensus disorder prediction 209 238 - -
Pumo2g00874 361 MobiDBLite consensus disorder prediction 1 20 - -
Pumo2g00874 361 PANTHER NAC TRANSCRIPTION FACTOR 56 15 210 - -
Pumo2g00874 361 SUPERFAMILY NAC domain 10 182 IPR036093 GO:0003677|GO:0006355
Pumo2g00874 361 FunFam NAC transcription factor 56 24 187 - -
Pumo2g00874 361 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Pumo2g00874 361 ProSiteProfiles NAC domain profile. 15 182 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00874 Pumo-Chr2 13373826 13375758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00874 12 361 NAC Transcription Factor Family AT1G61110 53.652 2.62e-112 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo2g00874 NAM 2.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00874 - - gmx:100806369 584.719