Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00859 ATGACTTGTGGCTGCTTTGGAGCCAAATCAATAAAGGCAACACGCCTTTCTTATGTTCCTGGTGAAATTGATGGCTATCTGCTAGATAATGTTAGGCAATTTTCTGATAAAGAACTGAGATTGGCAACTGATAATTATAATTCAAACAATAAGATAGGACGAGGAGGTTTTGGAACCGTTTACCAGGGAACCTTAAGAGATGGAAGGCGTATAGCAGTGAAGACTCTCTCAGTTGGGTCAAAGCAGGGAGTTCGTGAATTTTTGACTGAAATTAAAACTTTGTCAAATGTTAAACATCCAAACCTTGTTGAATTGATTGGATTCTGCATTCAAGGACCTAGTCGTACATTAGTCTACGAGTATGTGGAAAATGGCAGCCTTAATAGTGCTCTACTTGGCACAAGGAATGAAAACATGAAACTAGACTGGAGAAAAAGATCTGCTATTTGTGTAGGTACTGCTAAGGGTCTTGCATTTCTTCATGAAGAACTTTCACCACCTATTGTACACAGAGACATCAAAGCTAGTAATGTACTACTTGACAGAGATTTCAATCCCAAAATAGGTGATTTTGGGTTGGCTAAATTATTTCCAGATGACATCAGTCACATTAGCACAAGAATTGCTGGAACAACTGGTTACTTAGCACCGGAATATGCATTAGGTGGCCAGTTAACCAAGAAGGCTGATATATACAGTTTTGGGGTTCTTATACTTGAAATAATTAGTGGCAGAAGCAGTGCCAGAAGGACAAACGGGGGAGGATCACACAAATTCCTCTTGGAATGGGCCTGGCAACTTTATGAAGAGGGGAAATTGTTGGAGTTTGTAGATCAAGACATGGAAGAATTTCCTGAGGAAGAGGTAATTAGGTACATGAAGGTTGCACTTTTCTGCACACAGTCAGCAGCAAGTAGAAGGCCTTTGATGATACAAGTTGTTGATATGCTATCTAAGGCAATCCAACTCAATGAGAAAGAACTTACAGCACCAGGATTCTTCACAGATGAAGGAGAATCCTCTAGAAAGAACTCAAACCCTGTCTCTTCAATTACCTCTACTCATGTTACTATTACTCAGGTGACCCCACGGTGA 1095 0.4018 MTCGCFGAKSIKATRLSYVPGEIDGYLLDNVRQFSDKELRLATDNYNSNNKIGRGGFGTVYQGTLRDGRRIAVKTLSVGSKQGVREFLTEIKTLSNVKHPNLVELIGFCIQGPSRTLVYEYVENGSLNSALLGTRNENMKLDWRKRSAICVGTAKGLAFLHEELSPPIVHRDIKASNVLLDRDFNPKIGDFGLAKLFPDDISHISTRIAGTTGYLAPEYALGGQLTKKADIYSFGVLILEIISGRSSARRTNGGGSHKFLLEWAWQLYEEGKLLEFVDQDMEEFPEEEVIRYMKVALFCTQSAASRRPLMIQVVDMLSKAIQLNEKELTAPGFFTDEGESSRKNSNPVSSITSTHVTITQVTPR 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00859 364 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 29 346 - -
Pumo2g00859 364 CDD STKc_IRAK 52 319 - -
Pumo2g00859 364 MobiDBLite consensus disorder prediction 338 364 - -
Pumo2g00859 364 ProSiteProfiles Protein kinase domain profile. 46 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g00859 364 SUPERFAMILY Protein kinase-like (PK-like) 26 317 IPR011009 -
Pumo2g00859 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Pumo2g00859 364 Gene3D Phosphorylase Kinase; domain 1 22 121 - -
Pumo2g00859 364 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Pumo2g00859 364 MobiDBLite consensus disorder prediction 332 364 - -
Pumo2g00859 364 FunFam cold-responsive protein kinase 1 18 121 - -
Pumo2g00859 364 SMART serkin_6 46 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g00859 364 Pfam Protein kinase domain 46 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g00859 364 FunFam Putative LRR receptor-like serine/threonine-protein kinase 122 329 - -
Pumo2g00859 364 Gene3D Transferase(Phosphotransferase) domain 1 122 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00859 Pumo-Chr2 13097336 13100952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00859 34 336 Receptor kinase-like Gene Family AT1G56120 51.485 1.10e-103 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo2g00859 Pkinase 8.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00859 - - gmx:100809588 681.789