Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00840 ATGGCATTTCAGCACTACATTTCCCGGGATTTGAAAACTATCCCAAATGCTGTGACTGAGACAGAAAACTCCAATGGTTGTTTTGATTGCAACATCTGCTTAGACTTTGCAAATGAGCCAGTAGTGACCCTATGCGGCCACCTCTACTGCTGGCCATGCATCTACAAGTGGCTCCATGTCCAAAGTGATTCTCTTGCACCTGATGAGCATCCACAATGCCCCGTTTGCAAGGCTGATATATCCAATAGCACAATGGTCCCACTCTATGGCCGTGGCCATGCCACAGCTGAAGGCAAAACATCTACTTGTGATGTTTTTATACCACCAAGACCACCTGCTTCATGTGCTCAAGCCCTTTTGGCAACATCTTCATCTCAAAGGGGTCAGCACCTTCCATATCGTAATCCTTATCAGGGTCACTACTTCAACTCTCATCCATACCAAGAAGAGGATGATGCCACTTTACAAATGCTCAATCTTGGATCCCACCACCACCACCCTTTGACTGGGATGTTTGGGGAGATGGTTTATGCCAGAGTGTTTGGCAACCCAGAAAATTTGTATGCATACCCCAATTCTTATCAGCTGATGGGAAGTGCCACCCCTAGATTGAGAAGGCAAGAGATGCAGGCACACAAATCTTTGAACAGAATTTCTATTTTTCTCTTCTGCTGCTTCCTTCTTTGTCTTGTTGTCTTCTGA 702 0.4558 MAFQHYISRDLKTIPNAVTETENSNGCFDCNICLDFANEPVVTLCGHLYCWPCIYKWLHVQSDSLAPDEHPQCPVCKADISNSTMVPLYGRGHATAEGKTSTCDVFIPPRPPASCAQALLATSSSQRGQHLPYRNPYQGHYFNSHPYQEEDDATLQMLNLGSHHHHPLTGMFGEMVYARVFGNPENLYAYPNSYQLMGSATPRLRRQEMQAHKSLNRISIFLFCCFLLCLVVF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00840 233 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 128 - -
Pumo2g00840 233 SUPERFAMILY RING/U-box 26 89 - -
Pumo2g00840 233 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Pumo2g00840 233 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Pumo2g00840 233 SMART ring_2 30 76 IPR001841 -
Pumo2g00840 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 230 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pumo2g00840 233 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Pumo2g00840 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 90 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00840 Pumo-Chr2 12902833 12905136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00840 10 219 C3H Transcription Factor Family AT4G27470 40.826 3.17e-47 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00840 K10666 - gmx:100816864 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00840 2 12902833 12905136 Pumo2g00840 2 12902833 12905136 ECH