Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00830 ATGATCAGACACAAGCACACACACCCTCTTCTTCTCTTAACTCTCCTTCTTTTCAACTCAACATGTGCCATAGATTTTGTCTTCAACGGCTTCAACTCCTCTGAAGTGTTGCTCTTTGGCAACGCCACCATCGATTCTCGAATTCTAACACTCACCCACCAGCAAAGCTTCTCTGTCGGTCGTGCCTTGTACAATGAAAAAATCCCCACCAAGAAACCAAACTCTTCTCACGTGTACCCTTTCTCCACCTCTTTCATCTTTGCCATGGCACCTTTTGAAGACACTCTTCCAGGGCATGGCTTAGTTTTCATCTTCACACCTGTCACAGGCATCCACGGCACAAGTTCTGCACAACACCTTGGTCTGTTCAACCTCACCAACAACGGAAACTCGAGTAACCACGTGTTTGGTGTTGAGTTCGATGTGTTCAGCAACCAAGAGTTCGATGACATCAACGCCAACCATGTTGGGATTGACATAAACTCTCTTAAATCTTATGTTTCCCATGATGCTGGGTATTGGCCAGATGGTGGTGACAAGTCCTTTAAGGAATTGACGCTTAACAATGGTGAGAATTACCAAGTTTGGATTGACTATGAAGATTCTTGGATTAATGTTACCATGGCACCGGTGGGTATGAAAAGGCCTAGCAGGCCTTTGTTGAATGTTTCTCTCAACTTATCTCAGGTTTTTGAGGATGAAATGTTTGTTGGGTTTACTAGTGCCACTGGCCAATTAGTTGAGAGTCATAAGATTTTAGGGTGGAGTTTCAGCAATAATAATTTTTCGTTGAGTGATGAACTCATCACTACTGGATTACCTTCTTTTGTTCTTCCTAAGGATTCAATTTTTAAGTCCAAGGGGTTTGTTGCAGGGTTTACTGTTGGAATTTTCTTAGTTATTTGTGTCTTGGTTTTGTTGGTACTGTTTTTTATTCAGTGGAGGCGTAGTAGAGAAAGGAAGAGGCAGGAAATGGAAGATTGGGAGTTGGAGTATTGGCCACACAGAATGGCATATGAAGAAATTGAGGCAGCAACAAAGGGGTTCTCTGAGGAGAATGTGATTGGGGTTGGTGGGAATGGGAAAGTCTACAAGGGTGTTCTACGAGGAGGGGTGGAGGTTGCTGTGAAGCGCATTTCTCATGAAAATGATGGTTTGCGAGAATTTCTTGCTGAAGTTTCAAGCCTTGGGAGACTGAAGCAAAGGAATTTGGTGGGGTTGAGAGGTTGGTGCAAGAAAGATGTTGGGAATTTCTTGTTAATTTATGACTATATGGAAAATGGGAGCTTGGACAAGAGGGTGTTTGATTGTGATGAGAGCAAGATGTTAAGTTATGAAGATAGAATAAGGATTATCAAAGATGTGGCTTTTGCAGTGTTGTACTTGCATGAGGGGTGGGAAGCTAAGGTTGTGCATAGGGACATCAAGGCCAGCAATGTTTTACTTGATAAGGATATGAATGGAAGGCTTGGAGATTTTGGGTTAGCCAGAATGCATAGCCATGGTCAAGTTGCTAGCACCACAAAATTGGTTGGAACAGTGGGGTACATGGCTCCTGAAGTGATTAAGACTGGAAGGGCTTCCACTCAGACAGATGTTTACATGTTTGGCATCTTGATTTTAGAGGTCTTGTGTGGAAGGAGACCTTTAGAAGAGGGTAAGCCACCTTTGGTGGAGTTTGTTTGGCAACTAATGGTACAAGGGCAACTTGAGTGTGCACTTGATGAAAGACTAAGGGCTAAGGGAGAGTTCAATGTGCAAGAATTGGAGAGGGTAATGCACTTGGGTTTGTTGTGTGCATACCCTGAACCAAAGGCCAGACCCACAATGAGACAAGTGGTGAATGTTTTAGAGGGGAAGAATGAGGGAGAGGATTCAGAAATTGAGAATATGGATACCTATTTGCTCCAACAGTTGAAATCAAGGGATATATTGTCTGAATATTCTCAGTATTTTAGCTATACGTCACACCCAACTTTCCAAGATATTCGTCACTCTTCCTCAATGTCTCTCACTTGGTCCGGGTCTGTAGTTGAGGGTAGGTGA 2046 0.4316 MIRHKHTHPLLLLTLLLFNSTCAIDFVFNGFNSSEVLLFGNATIDSRILTLTHQQSFSVGRALYNEKIPTKKPNSSHVYPFSTSFIFAMAPFEDTLPGHGLVFIFTPVTGIHGTSSAQHLGLFNLTNNGNSSNHVFGVEFDVFSNQEFDDINANHVGIDINSLKSYVSHDAGYWPDGGDKSFKELTLNNGENYQVWIDYEDSWINVTMAPVGMKRPSRPLLNVSLNLSQVFEDEMFVGFTSATGQLVESHKILGWSFSNNNFSLSDELITTGLPSFVLPKDSIFKSKGFVAGFTVGIFLVICVLVLLVLFFIQWRRSRERKRQEMEDWELEYWPHRMAYEEIEAATKGFSEENVIGVGGNGKVYKGVLRGGVEVAVKRISHENDGLREFLAEVSSLGRLKQRNLVGLRGWCKKDVGNFLLIYDYMENGSLDKRVFDCDESKMLSYEDRIRIIKDVAFAVLYLHEGWEAKVVHRDIKASNVLLDKDMNGRLGDFGLARMHSHGQVASTTKLVGTVGYMAPEVIKTGRASTQTDVYMFGILILEVLCGRRPLEEGKPPLVEFVWQLMVQGQLECALDERLRAKGEFNVQELERVMHLGLLCAYPEPKARPTMRQVVNVLEGKNEGEDSEIENMDTYLLQQLKSRDILSEYSQYFSYTSHPTFQDIRHSSSMSLTWSGSVVEGR 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00830 681 FunFam L-type lectin-domain containing receptor kinase S.4 425 630 - -
Pumo2g00830 681 PANTHER - 40 621 - -
Pumo2g00830 681 SUPERFAMILY Protein kinase-like (PK-like) 325 618 IPR011009 -
Pumo2g00830 681 Pfam Protein kinase domain 350 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g00830 681 FunFam L-type lectin-domain containing receptor kinase S.4 22 265 - -
Pumo2g00830 681 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Pumo2g00830 681 SMART serkin_6 349 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g00830 681 Pfam Legume lectin domain 24 262 IPR001220 GO:0030246
Pumo2g00830 681 CDD lectin_legume_LecRK_Arcelin_ConA 24 260 IPR001220 GO:0030246
Pumo2g00830 681 Gene3D Transferase(Phosphotransferase) domain 1 425 642 - -
Pumo2g00830 681 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 311 424 - -
Pumo2g00830 681 CDD STKc_IRAK 355 619 - -
Pumo2g00830 681 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 267 IPR013320 -
Pumo2g00830 681 Gene3D Phosphorylase Kinase; domain 1 311 424 - -
Pumo2g00830 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Pumo2g00830 681 ProSiteProfiles Protein kinase domain profile. 349 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g00830 681 Gene3D - 22 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00830 Pumo-Chr2 12514620 12517179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00830 19 565 Receptor kinase-like Gene Family AT4G04960 69.022 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Pumo2g00830 Pkinase 3.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00830 - - gmx:100804391 1266.14