Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00826 ATGGAGAACAACCCTAGTTCATCCAGAGTTGACAGAAAATTCATTGAGAGGAATAGAAGAAATCAAATGAAAGCTCTTTTCCGCAAACTCAACTCACTTGTGCCTCATCAAAGATCAAAGGAGGCCATTTCACTGCCGGATCAGCTAGAAGAAGCCACAAACTACATAAAGAAATTACAGATTAATCTGGAGAAAATGAAGGACAAGAAGAACATGCTACTAGGAATTGAAAGGCCAAATGTGAGAATGAATGGAGGAAAAACCGCGGGGTTAAAATCTCCACGGATTGAGATCCAACAAATGGGTACAGCCTTAGAGGTTGTCCTAATAACTGGGTTGGATTCTCAGTTCATATTCAGTGAAACCATTCGTGTTCTTCATGAAGAAGGAGTAGATGTTGTTAACACCAGTTATAAAGTTATTGGAGATGCAGTTTTCCATTCAATACACTGTCAGGACGGGGAATCTGCCAACGGAGCTGCGAGGATATCTGAGAGGCTAAAGAACTTCATCTATGATTCTAGCTACAGTGTTTTTTAA 540 0.4019 MENNPSSSRVDRKFIERNRRNQMKALFRKLNSLVPHQRSKEAISLPDQLEEATNYIKKLQINLEKMKDKKNMLLGIERPNVRMNGGKTAGLKSPRIEIQQMGTALEVVLITGLDSQFIFSETIRVLHEEGVDVVNTSYKVIGDAVFHSIHCQDGESANGAARISERLKNFIYDSSYSVF 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00826 179 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 7 172 - -
Pumo2g00826 179 Pfam Helix-loop-helix DNA-binding domain 9 60 IPR011598 GO:0046983
Pumo2g00826 179 Gene3D - 1 83 IPR036638 GO:0046983
Pumo2g00826 179 SMART finulus 13 65 IPR011598 GO:0046983
Pumo2g00826 179 FunFam Transcription factor bHLH162 1 85 - -
Pumo2g00826 179 Coils Coil 49 76 - -
Pumo2g00826 179 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 59 IPR011598 GO:0046983
Pumo2g00826 179 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 74 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00826 Pumo-Chr2 12461701 12464183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00826 3 171 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 42.778 1.48e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo2g00826 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00826 - - gmx:100814407 313.153