Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00823 ATGGCAAAACCTATATCTAAAACGGGTTCGCGTAAAAATGAACGTATTGGTCCGCGTAAGCATACTCGGAAAATACCAAAGGGAGTTATTCATGTTCAAGCTAGTTTCAACAATACTATTGTGACTGTTACAGATGTACGAGGTCGGGTGATTGCTTGGTCCTCCGCCGGTACTTGTGGATTCAAGGGTACACGAAGGGGGACACCTTTTGCCGCTCAAACTGTAGCAGGAAATGCTATTCGAACAGTATCGGATCAAGGCATGCAACGAGCATAA 276 0.4493 MAKPISKTGSRKNERIGPRKHTRKIPKGVIHVQASFNNTIVTVTDVRGRVIAWSSAGTCGFKGTRRGTPFAAQTVAGNAIRTVSDQGMQRA 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00823 91 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 5 91 IPR001971 GO:0003735|GO:0005840|GO:0006412
Pumo2g00823 91 Gene3D Ribosomal protein S11 8 91 IPR036967 GO:0003735|GO:0005840|GO:0006412
Pumo2g00823 91 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 15 90 IPR001971 GO:0003735|GO:0005840|GO:0006412
Pumo2g00823 91 Pfam Ribosomal protein S11 28 90 IPR001971 GO:0003735|GO:0005840|GO:0006412
Pumo2g00823 91 MobiDBLite consensus disorder prediction 1 24 - -
Pumo2g00823 91 SUPERFAMILY Translational machinery components 23 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00823 Pumo-Chr2 12444763 12445038 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00823 1 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 31.461 3.29e-06 40.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00823 K02948 - gmx:3989330 174.096