Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00817 ATGGCCACGCCGCCTATTGATCGCTGGGACGCTGATAAAATGGGAATGCACAACGCCGCTAAGATTTTCAAGATGGAAGCACAAGTTCCCGATCACCCTGTTTATTCAGTGATTGATTCTCCAGATGGATTCCTGCATGAATGGTGGTCTATTTTCTATGAGGTGTTTACCTCTAGGCAAGGGAAGGACCAAGAGACTACTGGGCCAGGGTCCTCTAGTAAGGTGGTCCCAATGATGACACATAATGCAAGGAATAATGCCCCTCCTAGAATCCCTCAAATATCAATGAGTGAGCAGAGAACTCCACAATTTCAATTCAACTCCAGCTTTAACAACGTGATGGCTCAACAAGCCGTTTGTGTAATACCTTCAACAATGTACAATAAAGAAGAGCATCTTGGATATCTGCCCGAAAATGTTGAACCAAGTTTGCATGATGTTATCAAAAATAACCTGAGATTCTTGTCAGGGACTAGTTCAAATTATCCACCTCAAGATGTAGGCAAGCAGGCCCAGAAGCAAGTCTTTAAGGATAGTGGAATTGGCATGAGTGTGGAGAGGGATATACCTAGGGACCCACTGGACGTAATGCAAAAAACAATGCTTCCTTTAGATGGACCTCATGAAACAAAAACCTATGGAGCTCTCAGTATAGTGCCACTAAATGGATGGCCAATAAATACTTCCACTGTTCCTGAAAACTCTAGCAAATGCAACACTACTAAGATTTCTGAGACTGAATCAAGTGATAAGGATAAGCAGATGATAAACCAAATGATTACAACTGTAGAACATCAACACCAGCAGGATCAACAAATGCAGATGCAGTCCCAGAATAACTGTGAGGATACAGCCGATGGAAAACCTGTGGATGAAAATGTGGAGTCTTTCCTGTCTTTAGAAAATGAAAATGCTGATCATAAAATTGCACCCTTCAGCAATCTGAAACGAACTTCAGCTACATGCAGAAATGAAAAGAAAGGTTTTTCATTCGAAGAGGTTGGTTGCCTTCATTCAAGCAAAAGCAAGGTTTTGTCTAGCCATTTTTCGTCGGATGGAAAAGTTTTGGCAAGTGCTGGACATGAGAAGAAGGTTTTCATTTGGAACATGGAAACTTTTGATTGTGTAACTACTACAGAAACACATTCACTTCTTGTTACAGATGTTCGGTTTAGACCAGGTTCAACTATCTTTGCAACTTCTTCCTTTGATAGATCTGTGAGACTATGGGATGCAGCCAGACCAACCGTATCTCTGCTCAATCTTACTGGGCATGACGAACAAGTAATGTCATTGGACTTCCACCCAAGAAAAGTGGACCTTCTTTGCTCATGTGATAGCAATGATGTAATTCGACTGTGGAATATCAATCAAGGTGTTTGCATGCATATCACTAAGGGAGGTAGTAAACAGGTCAGATTCCAGCCTTGTTTTGGGAAGTTTTTGGCTACTGCTACAGGAAATAATATCAAAATATTTGATGTGGAGACTGACAGTCTTCTGTACAATCTAGAGGGACATGTTAAAGATGTTCTCTCCATTTGTTGGGATAAAAATGGAAACTATATTGCCTCCGTCAGTGAAGATAGTGCACGTATCTGGTCATCAGACGGAAAATGCATAAGTGAATTGCATTCAACCGGAAACAAGTTCCAATCATGCATATTTCATCCAGGATATCTTAACCTCTTAATTATTGGTGGTTATCAGTCCCTGGAATTGTGGAGTCCCACCGAGAGCAGTAAAACATGGGGCGTTCCAGCTCACAAGGGATTAATTGCTGGACTAGCAGATTCTCCCGAAAATGAAATGGTTGCCTCAGCTAGCCATGATCATTGCGTGAAACTATGGAAATGA 1857 0.4146 MATPPIDRWDADKMGMHNAAKIFKMEAQVPDHPVYSVIDSPDGFLHEWWSIFYEVFTSRQGKDQETTGPGSSSKVVPMMTHNARNNAPPRIPQISMSEQRTPQFQFNSSFNNVMAQQAVCVIPSTMYNKEEHLGYLPENVEPSLHDVIKNNLRFLSGTSSNYPPQDVGKQAQKQVFKDSGIGMSVERDIPRDPLDVMQKTMLPLDGPHETKTYGALSIVPLNGWPINTSTVPENSSKCNTTKISETESSDKDKQMINQMITTVEHQHQQDQQMQMQSQNNCEDTADGKPVDENVESFLSLENENADHKIAPFSNLKRTSATCRNEKKGFSFEEVGCLHSSKSKVLSSHFSSDGKVLASAGHEKKVFIWNMETFDCVTTTETHSLLVTDVRFRPGSTIFATSSFDRSVRLWDAARPTVSLLNLTGHDEQVMSLDFHPRKVDLLCSCDSNDVIRLWNINQGVCMHITKGGSKQVRFQPCFGKFLATATGNNIKIFDVETDSLLYNLEGHVKDVLSICWDKNGNYIASVSEDSARIWSSDGKCISELHSTGNKFQSCIFHPGYLNLLIIGGYQSLELWSPTESSKTWGVPAHKGLIAGLADSPENEMVASASHDHCVKLWK 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00817 618 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 378 IPR001680 GO:0005515
Pumo2g00817 618 Gene3D - 229 473 IPR015943 GO:0005515
Pumo2g00817 618 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 422 459 - -
Pumo2g00817 618 SUPERFAMILY WD40 repeat-like 331 618 IPR036322 GO:0005515
Pumo2g00817 618 ProSiteProfiles Trp-Asp (WD) repeats profile. 379 411 IPR001680 GO:0005515
Pumo2g00817 618 ProSiteProfiles Trp-Asp (WD) repeats profile. 422 464 IPR001680 GO:0005515
Pumo2g00817 618 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 586 618 - -
Pumo2g00817 618 ProSitePatterns Trp-Asp (WD) repeats signature. 442 456 IPR019775 -
Pumo2g00817 618 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 379 411 - -
Pumo2g00817 618 SMART WD40_4 415 455 IPR001680 GO:0005515
Pumo2g00817 618 SMART WD40_4 577 618 IPR001680 GO:0005515
Pumo2g00817 618 SMART WD40_4 372 411 IPR001680 GO:0005515
Pumo2g00817 618 SMART WD40_4 458 494 IPR001680 GO:0005515
Pumo2g00817 618 SMART WD40_4 330 369 IPR001680 GO:0005515
Pumo2g00817 618 SMART WD40_4 497 535 IPR001680 GO:0005515
Pumo2g00817 618 SMART WD40_4 537 576 IPR001680 GO:0005515
Pumo2g00817 618 Pfam WD domain, G-beta repeat 500 535 IPR001680 GO:0005515
Pumo2g00817 618 Pfam WD domain, G-beta repeat 374 411 IPR001680 GO:0005515
Pumo2g00817 618 Pfam WD domain, G-beta repeat 420 455 IPR001680 GO:0005515
Pumo2g00817 618 Pfam WD domain, G-beta repeat 587 618 IPR001680 GO:0005515
Pumo2g00817 618 MobiDBLite consensus disorder prediction 230 250 - -
Pumo2g00817 618 Gene3D - 474 618 IPR015943 GO:0005515
Pumo2g00817 618 CDD WD40 333 618 - -
Pumo2g00817 618 ProSiteProfiles Trp-Asp (WD) repeats profile. 586 618 IPR001680 GO:0005515
Pumo2g00817 618 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 13 618 IPR044716 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00817 Pumo-Chr2 12390341 12396859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00817 355 534 U-box Gene Family AT2G33340 25.926 8.45e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pumo2g00817 WD40 0.0057 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00817 - - gmx:100783354 1110.52