Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00812 ATGGCAAGAGGTTCTTACGAGCAAAGCGTGGCCTTCCTAGGATTCCTTAGAACGAGCAAAATGTCGGGTAACTGTGAGAAAATGGTAGCCATCCCTTCAACGACTAACCAATGGCCACAGGTGGATGATCACAAGGTCTTGATGGGTTCCTCCGGTGGAAGTAGTAACAATAATAAGGTAATGGAAAAACCAGGTCAAGAGCTTCTGCAGCAGCAGCAACAACAAGCCCTTAAGTGCCCTCGTTGTGACTCATCAAACACCAAGTTCTGCTACTACAACAACTACAGTTTGTCTCAGCCTAGACACTTCTGCAAAGCCTGCAAGCGCTATTGGACAAGAGGTGGAACCCTCAGAAACGTTCCTGTTGGTGGAGGGTGCAGAAAAAACAAGCGTGTCAAGCGTCCAATAACAAACTCTTCTTCTGCCGCCATTGACACTGCTTCTTCTTCTAATTCCTCTTCTGCTCCCACTGCTGCATCACAACCCCAGATCGACACTGCTTCAACCGTCAAACCACATCAACCCTTTGTTTTATGGCATACCGAGTAG 549 0.4754 MARGSYEQSVAFLGFLRTSKMSGNCEKMVAIPSTTNQWPQVDDHKVLMGSSGGSSNNNKVMEKPGQELLQQQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPITNSSSAAIDTASSSNSSSAPTAASQPQIDTASTVKPHQPFVLWHTE 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00812 182 MobiDBLite consensus disorder prediction 136 174 - -
Pumo2g00812 182 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Pumo2g00812 182 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
Pumo2g00812 182 Pfam Dof domain, zinc finger 75 131 IPR003851 GO:0003677|GO:0006355
Pumo2g00812 182 MobiDBLite consensus disorder prediction 136 170 - -
Pumo2g00812 182 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 62 159 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00812 Pumo-Chr2 12353140 12355993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00812 77 135 C2C2-Dof Transcription Factor Family AT1G28310 96.610 6.16e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo2g00812 zf-Dof 5.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00812 - - gmx:100801049 226.098