Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00811 ATGGACGAAAGTTGGAGTGAGGGAAAAAGGAGCATGAATTACAAGGAGGAGGATGAGTACGAAGAAGAGGAAGAGGAGGAGGTGAGTGAGTATGGAGATGATGATGGTAGGAAAAAGAGGGTGGTGAGTAGTAAGAGAGGGTCCAAAGCTGGAGGCTCAGTGCCACCTTCATGTCAAGTGGATGGTTGTAACGCTGATCTAAGTGATGCTAAGCCCTACCACAGGCGTCACAAGGTTTGTGAGTACCATGCCAAGGCTCCTGCCGTACTCATTGGAGACCAGCACCAAAGGTTTTGCCAACAATGTAGTAGGTTTCATGAGCTATCAGAATTCGATGACTCAAAAAGGAGTTGCAGAAGACGTTTGGCTGGACATAATGAGAGGCGTCGCAAAAATGCATCTGAATATCACGGACTTTGA 420 0.4714 MDESWSEGKRSMNYKEEDEYEEEEEEEVSEYGDDDGRKKRVVSSKRGSKAGGSVPPSCQVDGCNADLSDAKPYHRRHKVCEYHAKAPAVLIGDQHQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKNASEYHGL 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00811 139 PIRSF SBP 5 139 IPR017238 GO:0003677|GO:0003700|GO:0009908
Pumo2g00811 139 Pfam SBP domain 58 131 IPR004333 GO:0003677
Pumo2g00811 139 SUPERFAMILY SBT domain 56 136 IPR036893 GO:0003677|GO:0005634
Pumo2g00811 139 MobiDBLite consensus disorder prediction 1 63 - -
Pumo2g00811 139 MobiDBLite consensus disorder prediction 17 31 - -
Pumo2g00811 139 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 11 133 IPR044817 GO:0003677
Pumo2g00811 139 MobiDBLite consensus disorder prediction 1 16 - -
Pumo2g00811 139 ProSiteProfiles Zinc finger SBP-type profile. 55 132 IPR004333 GO:0003677
Pumo2g00811 139 Gene3D - 48 119 IPR036893 GO:0003677|GO:0005634
Pumo2g00811 139 FunFam Squamosa promoter-binding-like protein 14 49 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00811 Pumo-Chr2 12328435 12330411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00811 1 135 SBP-box Gene Family AT2G33810 56.296 1.50e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo2g00811 SBP 2.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00811 - - gmx:100782285 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00811 2 12328435 12330411 Pumo2g00811 2 12328435 12330411 ECH
Pumo4g03423 4 71855931 71857462 Pumo2g00811 2 12328435 12330411 ECH