Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00806 ATGTCTATCCCCGATTCTCCCGTCGCCGACGATGTCGAAACCGATCCATCGCTTGACGAAGAAGAAGAAGAAGTCGAAGAAGAAATAGAGGAGGAGGTTGAGGAAGAAGTGGAAGAGGAGGAGGTCGAGGAAGAAGTAGAGGAGGAAGAGGTCGAGGAAGAAGAAGTGGAGGAGGAAGAAGTAGAAGAGGAAGAGGTTGAGGAGGAAGAAGTAGAAGAGGAAGAGGAAGTGGTCGAGGAAGAAGTAGAAGAGGAAGAGGAAGTAGAAGAGATAGAGGTAGAGGAAGAAGAAGAAGAAGTCGAAGAAGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAGGAACAACAACAACAACAACAAGAAGCAGTGGAAGAGAAGAAGGAAGAGCAACAACAGCAACAACAAGCAGAAGAAGCAGTGAAGGAGAAGGAGGAACAACAAAAACAACAAGAAGAAGAAGCAATGGAGGAGGACAAAACAGCGGTGCCATGTTCTCCACTCGATGCGGATAAGGATCGCAAAGATTCGAGCCAACATATGGAGTTTGAGGGGCAAGACAAAAACTTGGGACCAGTTTCTTCTGTGGCTGAAAACCCTGAAGTAATGCCACCGTCTAGTATGCATTGCATGGAAGAGAATGATGCCTTGCTCAAAAAATGTGAGATACTAACATTGAAAAAGGAAGAGCTTCCCCTGAAATATGAAATTTCGATTCATCCAAAATCAAGAGACAATCTGACTTCTGTTGAAGATCGCAAAAGTCAAGGATTAGATGTTGAAGTTGGAAATGCTGGATCCCTTCTGCAGAAGGAAACATTTGGAGGATACAGCGAGCCAGGTTGCAATAGCAAAGCTAATTTATGTGTTGATAATGATGTTGATTCCGGAGCCAGGGCCACCAAGTCATCTAGTGATACTGTACAAGATATGGTTATTGGCCCCCTACCGAGAGATTGCCTTGTTGAGGATTCTAATGGTGGTCAGAATTCTAGGAACAAAATCATGCAGTCAGAGATGGAGTCAAGGGATGATGTGAAACAAATGACATCAAGGACTAGAAGTCTGTCTCCCAGTGCTGAGATTAAAGACAGAAACAAACGCCCCAGAATATGTGATTTTTTTGCTAAAGGATGGTGTATCAGAGGTAGTTCTTGTAGCTTTCTTCATATTAAAGATACTGTGGACAATACTGACCAGAAGGCTGAAGCAGACTTAGTTACTGCTCATCAGAAGAGAGAATTGAAAGTGGAAGAAGGTGTCAGGGAAAATGTTGAGAGATCAAGGATGAATGAGCAAGAAACAACTCCTAGTTGGCATCCATCTCAAGAAAAACAAAAGTTTCCACTGGGGGACAACTTGTTTCCAGAGAATAGATTTGCATTTAGTGCATCGGACAATTATTTCAGCCCAAATCTTTCTTTGAATTCAACCCGTGCAGATGGAATGGCTACTCTTCAGAACCAACATATGTACAAAGGATATACTTCCAAACTTTTGAGCCATTCACCAAATTCGAGCCTGGTTACTCAATTTCCAGCTTCAAGTATGCCACTCTCCCACCGGATTCTAGCCCAATTAGGACGTTCCTTGCCTTTTAGTTCATCTTTGGGGGCTAGTAATATGGATTCTCAAAAGTTTTTGAACACTGACAAAGAATATCTCACCTCTAAGTCCACTTTGTCTGGTTCAGGGCAGGAGGATTTTCCTCTAGTTAGTTCGTCCAGGGTTCCATCATATCCTGCTGGATATAAATCAAAAATCTGTTCTTATGATTGGGAACCTTCTGTGCCCTTTCGACCATCTTTTTTTATTACTTCTATGAATGTATCATCTCCTGGAGATCTTTATGACCCTCTTCGTGATAGCATTGAGATACCTAATATAGGAGATGGGTCTTTGAAGGCTTCCCTTTTAATTCAGGGATCAAATGTACAGGCTTCATTACAGGTTCGGACATATGGTGATTCTGCTGTAGTTGGCAAACACATGTCCAATCTTAATGATGACAAAAGTTCTGTATCTTCTCATAATAAATTTTGTGAAAATGAGCCCAACAAAAATTGTGTTCCTCATGAAAAAGATTGTCTTCCACCTGAAACAGAGATAACATCAGGAACTTATGTAAACTATCAAGGTAAAATGGGCATGGGACAACATACCTTTGGTGTTGCAGATAGTAGAAAAACAGAGAGAGATTTTACTGCGCGTGATGCTAGACGTCATGGTGAAGGATCAGGGCACAAAAAGAAGAGAGTAGACAGGGATAAGAAAAATCATGAAATGGATGTTGACTTTCAGATGGATGGCAGCATGCAGAAGGAATCAAAGGCACTAAAATTTTTTCGCGCAGCTCTTGTTGATCATGTAAAAGAGTTGTTAAAACCAACTTGGCATGAGGGTCGTCTCAGCAAGGATGCACATATTATGATAGTCAAAAAATCAGTTGACAAGGTTGTTAGCACCTTAGAGCCCCATCAGATTCCGACCATAGATACTGCTAAGCAATATGTTTCTTCAAGTCAGGTGAAAGTGAAAATAGCAAAGCTGGTCAACGGATATGTCAATAAATATGGCAAATCTTGA 2583 0.4162 MSIPDSPVADDVETDPSLDEEEEEVEEEIEEEVEEEVEEEEVEEEVEEEEVEEEEVEEEEVEEEEVEEEEVEEEEEVVEEEVEEEEEVEEIEVEEEEEEVEEEEEEEEEEEEEEQQQQQQEAVEEKKEEQQQQQQAEEAVKEKEEQQKQQEEEAMEEDKTAVPCSPLDADKDRKDSSQHMEFEGQDKNLGPVSSVAENPEVMPPSSMHCMEENDALLKKCEILTLKKEELPLKYEISIHPKSRDNLTSVEDRKSQGLDVEVGNAGSLLQKETFGGYSEPGCNSKANLCVDNDVDSGARATKSSSDTVQDMVIGPLPRDCLVEDSNGGQNSRNKIMQSEMESRDDVKQMTSRTRSLSPSAEIKDRNKRPRICDFFAKGWCIRGSSCSFLHIKDTVDNTDQKAEADLVTAHQKRELKVEEGVRENVERSRMNEQETTPSWHPSQEKQKFPLGDNLFPENRFAFSASDNYFSPNLSLNSTRADGMATLQNQHMYKGYTSKLLSHSPNSSLVTQFPASSMPLSHRILAQLGRSLPFSSSLGASNMDSQKFLNTDKEYLTSKSTLSGSGQEDFPLVSSSRVPSYPAGYKSKICSYDWEPSVPFRPSFFITSMNVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIQGSNVQASLQVRTYGDSAVVGKHMSNLNDDKSSVSSHNKFCENEPNKNCVPHEKDCLPPETEITSGTYVNYQGKMGMGQHTFGVADSRKTERDFTARDARRHGEGSGHKKKRVDRDKKNHEMDVDFQMDGSMQKESKALKFFRAALVDHVKELLKPTWHEGRLSKDAHIMIVKKSVDKVVSTLEPHQIPTIDTAKQYVSSSQVKVKIAKLVNGYVNKYGKS 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00806 860 MobiDBLite consensus disorder prediction 319 360 - -
Pumo2g00806 860 SMART c3hfinal6 365 391 IPR000571 GO:0046872
Pumo2g00806 860 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 368 389 IPR000571 GO:0046872
Pumo2g00806 860 MobiDBLite consensus disorder prediction 726 760 - -
Pumo2g00806 860 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 75 859 - -
Pumo2g00806 860 ProSiteProfiles Zinc finger C3H1-type profile. 365 392 IPR000571 GO:0046872
Pumo2g00806 860 SUPERFAMILY CCCH zinc finger 365 389 IPR036855 GO:0046872
Pumo2g00806 860 MobiDBLite consensus disorder prediction 1 199 - -
Pumo2g00806 860 MobiDBLite consensus disorder prediction 726 742 - -
Pumo2g00806 860 MobiDBLite consensus disorder prediction 12 118 - -
Pumo2g00806 860 Gene3D - 357 442 - -
Pumo2g00806 860 MobiDBLite consensus disorder prediction 119 182 - -
Pumo2g00806 860 Coils Coil 18 161 - -
Pumo2g00806 860 MobiDBLite consensus disorder prediction 420 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00806 Pumo-Chr2 12280009 12288410 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo2g00806 zf-CCCH 2.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00806 - - gmx:100819734 1247.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00806 2 12280009 12288410 Pumo2g00806 2 12280009 12288410 ECH