Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00803 ATGCATGGCCCATCCCATCCCATCCCATCCCCATCTATAAAAAACCCACCTGCTCTCTCCCACTCTGGTGCATCTCATCTATGCATTTTCTCTCTTTCCTCTCACACTCTGCCTCAAAACTCCGTCTCCGCAAAAACGAAAAAAAATAAATTAGTTGAATTAAATATTATTATGGCGCCGAGGGACAAGACGAGTGGCGTTAAGGTTAACGGCAACGGTAACGGCGGGGTGAAGGAGGTGCATTTTCGTGGAGTGAGGAAGAGGCCGTGGGGGAGATACGCCGCGGAGATCAGAGATCCCGGCAAGAAGAGCCGCGTGTGGCTCGGAACCTTCGACACGGCGGAGGAGGCGGCGCGTGCGTACGACGCCGCCGCACGCGAGTTCCGCGGCCCTAAGGCGAAGACCAATTTCCCTCTCCCTTCGGAAAATGTTAAGAACGCGAGCCCTAGCCAGAGCAGCACCGTCGAGTCCTCCAGCCGCGACCGCGACGTCGCCGCCGATTCCTCGCCGCTCGACCTCAACCTGGCCCCCGCCGCAGTCTCCTCCGCTCGATTCCCCTTCCAGCACCAGTTCCCGGTTTTTACCGGCGCGGTGCCGACGGCAAACCAGGTCTTGTACTTCGACGCTGTCCTACGCGCCGGCATGGCCGGTACACGTGGCTTTGCGTTTGGTTACAACCATCTTCCCGTTGCGGCGAGTGAGTTCCACGCGACGGCGAGCGACTCGGACTCGTCCTCCGTGATCGATCTGAACCATAATGAAGGCGATGTTAAGGGGAACGGTTCTAGAATCTTCGATCTCGACCTTAACCACCCTCCTCCGCAAGAGATCGCTTGA 837 0.5783 MHGPSHPIPSPSIKNPPALSHSGASHLCIFSLSSHTLPQNSVSAKTKKNKLVELNIIMAPRDKTSGVKVNGNGNGGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGPKAKTNFPLPSENVKNASPSQSSTVESSSRDRDVAADSSPLDLNLAPAAVSSARFPFQHQFPVFTGAVPTANQVLYFDAVLRAGMAGTRGFAFGYNHLPVAASEFHATASDSDSSSVIDLNHNEGDVKGNGSRIFDLDLNHPPPQEIA 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00803 278 MobiDBLite consensus disorder prediction 132 167 - -
Pumo2g00803 278 Gene3D AP2/ERF domain 80 139 IPR036955 GO:0003700|GO:0006355
Pumo2g00803 278 ProSiteProfiles AP2/ERF domain profile. 81 138 IPR001471 GO:0003700|GO:0006355
Pumo2g00803 278 CDD AP2 81 138 IPR001471 GO:0003700|GO:0006355
Pumo2g00803 278 Pfam AP2 domain 81 130 IPR001471 GO:0003700|GO:0006355
Pumo2g00803 278 SMART rav1_2 81 144 IPR001471 GO:0003700|GO:0006355
Pumo2g00803 278 MobiDBLite consensus disorder prediction 139 159 - -
Pumo2g00803 278 SUPERFAMILY DNA-binding domain 81 139 IPR016177 GO:0003677
Pumo2g00803 278 MobiDBLite consensus disorder prediction 259 278 - -
Pumo2g00803 278 FunFam Ethylene-responsive transcription factor 2 80 139 - -
Pumo2g00803 278 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Pumo2g00803 278 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Pumo2g00803 278 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 49 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00803 Pumo-Chr2 12222504 12224481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00803 58 143 AP2-EREBP Transcription Factor Family AT5G44210 72.340 1.12e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo2g00803 AP2 1.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00803 K09286 - gmx:100170742 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00803 2 12222504 12224481 Pumo2g00803 2 12222504 12224481 ECH
Pumo4g03415 4 71735828 71737101 Pumo2g00803 2 12222504 12224481 ECH