Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00790 ATGGAGGCTGAGGCAGAGGACAACGCCGTGAAGAGAGAAGAAAACAGCAATGAGAACAACAACAACAACAATTACAATGAAAGTAACAGCAAAATTGGGAATTCCAGTGAGGGTCAGAGCAAGCCCAAGCGTCAGATGAAGACGCCGTTTCAGCTTGAAACGCTCGAGAAAGCTTATGCTGTGGAGAATTACCCGTCGGAGACGATGAGGGCGGAGTTGTCGGAGAAGTTGGGGTTGTCGGATCGGCAGTTGCAGATGTGGTTCTGTCACCGGCGGTTGAAGGACAAGAAGGACTTGCCGTCGAAGAAGCCACGTAAGGGGGCGGCGTTGCCGGATTCTCCGGTGGAGGAGCCCAAGTTGGGCCCTGAAGTGGGTGTCGAATACGGATCCGGGTCGGGTTCGGGGTCCAGCCCGCTTAACCGTTCGGAGTTGAGGAATGTGGTGCCTCGGGGGTACTATGAGTCTCCACAGACTATAATGGAGCTTAGAGCAATTGCTTGTGTGGAGGCTCAGTTGGGGGAGCCTTTGAGGGAAGATGGTCCTATTCTTGGAGTGGAGTTTGATCCGTTGCCACCGGATGCATTTGGGGCACCCTTAGCTGTTACGGAACAGCAGAAGCGGCCTAGTCTTGCCTATGACAGTAAAATATATGAAAGACACGATGTTAGGACAAATAAGGCAATAGCAAGGACATTCCATGAATATCCTTTTCTTCCAAACCAGTCTGGCATTAGATCTGATGTTTATGGACAACTGAACCTACCTCATTTACATGATCCAATGGAGGGTCCTACCAGAACTCCTTTTCCCCTTGGAAATGAACAGCAACCCAGAATTCATGCTCCCCAAAGTCATTCTTCTCGTGTTCGCCTTTTGTCTCAACAGCAGGACAAGCAAGTGATTCCATATCCATCTCCTCCTCAAGACAATGACATTGCACTCAAAAGGGAACCTCACACAAACATAACCAATACTGGAATGAACTCCCACTTTACTGATCACCCAATTGTTGGACAAGAAAATCCGTATGCTTTACCCGGTGGGCAAGTTTCCCATAATGATGCAGTATTGAGGGTGGAGAGGAAACGAAAGAGTGATGAAGTCAAAGTTGCAAAGGAAGTTGAAGCCTATGAAATGAGGATGCGGAAAGAGCTTGAGAAACAAGATAACCTCAGACGAAAGAGTGAAGAGCGATTGAAGAAAGAAATGGAAAGGCAAGATCGTGAAAGAAGGAAGGAAGAAGAGAGGTTGATGCGTGAGAAACAGCGAGAAGAGGAAAGATCAAGGCGTGAGCAAAGACGGGAAATGGAACGAAGGGAAAAATTTTTGTTGAAAGAACATTTAAGAGCTGAGAAAAGGAGGCAAAAAGAAGAGATCCGCAAAGAGAAAGAGGAGGAGAGGAGGAAAGCTGCCCTTGAGAAGGCAAATGCTCGGAGAATAGCTAAAGAATCTATGGAGCTTATCGAGGATGAACAACTGGAGTTGATGGAGTTGGCTGCTGCAAGCAAGGGGCTTTCCTCTATTATTCATATTGATCTTGATACTTTGCAAAACCTTGAATCGTTTAGGGATTCATTGTGTGTATTTCCGCCCAAGAGTGTAAAGCTGAGAAAACCATTTTCTATCCAACCCTGGATCAACTCAGAACAGAATATTGGCAACCTTCTCATGGTTTGGAGATTCTTGATTACTTTTGCTGATGTTCTTGATTTATGGCCTTTTACTCTTGATGAGTTTGTACAGGCATTTCATGACTATGATTCTAGATTGTTGGGTGAGATACATGTTGCTCTTCTCAAGGTGATAATAAAAGACATTGAAGATGTTGCAAGGACACCTTCTACAGGATTAGGGATGAACCAGAACGGTGCTGCTAATCCTGGAGGTGGCCATCCAGAGATTGTGGAAGGAGCATATGCATGGGGTTTTGACATACGAAATTGGCAGAAGAACTTAAATCAATTGACATGGCCAGAAATTTTCCGACAGTTAGCACTGTCTGCAGGATTAGGACCACAGCTGAAGAAAAGAAATATTACATGGTCATATGCAATTGATAAAGACGAGGGAAAAAGTTGCGAAGATATCATTTCTACACTTCGTAATGGTTCAGCAGCTGAAAGTGCTGTGGCCAAAATGCAAGAGAGAGGTCTTTTAGCTCCTCGAAGATCAAGGCACCGGTTAACTCCTGGAACAGTTAAATTTGCAGCTTTTCACGTTCTCTCGCTGGAGGGTAGTAAGGGTTTAACAGTACTAGAGCTTGCAGAAAAAATTCAGAAATCTGGTCTTCGGGACCTGACGACCAGCAAGACGCCTGAAGCATCAATTTCTGTTGCTTTGACAAGAGACACTAAATTGTTTGAAAGAATAGCTCCATCAACATATTGTGTACGAGATGCATTCAGAAAGAATCCTGCTGATGCTGACTCCATTCTTTCAGACGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGGTGAAGATGCTGATGATGTTGAAAGAGAAGAGGAGTCAGAAAGTGATGAAGTTGATGAGGATCCTGAAGATGATGAGTTAGTAAATCCTTCAAATCTTATTCAAAATGAGTTTGATACGGATCTACCTTGTTTTCCTAAGAATGGTTCCAAGGATGCTGATTGTCCCAGTTCTGTCACCAGACAGCCTGTTGCTTGTGAAGATTTAAATGCTGGCAATCTCGATCAAGATAATATGGAAATTGATGAAAGCAAATCTGGAGAGTCCTGGATTCTAGGGCTCGCTGAAGGAGAATATTCTGATCTCAGCGTAGAGGAGCGTCTAAATGCTCTTGTTGCATTGGTTGGCGTGGCAAATGAAGGAAATTCAATCCGTGTTGTTCTTGAGGATCGATTGGAATCAGCAAATGCTCTGAAGAAACAGATGTGGGCAGAAGCACAGATAGATAAAGTTCGTCTGAAAGATGATAATATTAGTAAATTAGATTTTCCATCACTTACTGGGAATAAAGTTGAAACACCATACACTTATCCAGCTGTGCAGGGCAACCAAAGCCCAATGCTTGACATTAATATTAACAATATTAATAATGAAGCATCACCCAGCACTGCAGAAAACCAAAAAGGAGCTCCTGTAGCACAGAGCATGCCTATGGAAAAGTCCTCATCAATTCAAGATTTTGGCACAGCTACTGGTACAGACACACCTCAGATGCAGGTACCTGCACAATATTCGAAAAGATCACGTTCACAGTTGAAATCTTATATTGCCCACATAGCAGAGGAGATGTATGTCTACAGGTCTTTACCCCTTGGCCAAGATCGCAGACATAATCGATATTGGCAGTTTGTTGCTTCTGCTTCTAGCAATGATCCTGGTTCCGGCAGGATCCTTGTTGAATATCATGATGGCAAGTGGAGGCTTATTGATTCTGAAGAGGCCTTTGATGCTCTTTTGACATCATTGGATTCACGTGGGATCAGGGAATCTCATTTGCGCTTAATGTTGCAAAAGATTGAGAATTCCTTTAAAGAAAATGTTCGCAAGAGGAATGCACGTTGTGCCAAAAATGGAAGCAGAGGCGAAGTTTCTATTAAAATTGAAGCTAATGAAACATGTTCTATCCCTGACCAAAATGCTGGATCTGACAGTCCTAGCAGTACCCTTCATGACTTGAACACTGATCCATCTGAAACTTCATCATCCTTCCAAATAGAGCTTGGGAAAACTGAGAGTGAGAAGAAAGCTGCCTTGAGAAGGTATCAAGATTTTCAGAAGTGGTTGTGGAAAGAATGCTATAATTCATCGGTTTTATGTGCAATGAAATATGGGATAAAGAGATGCAAACCTCAGATGGACATTTGTGATATCTGTCTCAATCTTTATTTTGTTGAAGACTCCCATTGCAATTCTTGCCACCGGACTTTTCCCTCAAATAATGGATTTAATTTTTCTAAACATGCATTTCAATGTCGAGACAAGTTATCCAAAGATAATTGTATTTTGGAATATTCTCTTCCCTTGCGGACAAGATTGCTTAAGGTCCTGTTGGCTTGTATGGAGGTATCTGTTCTATCTGAAGCATTTGAAACAAATTGGATCGATGATATTAGGAAGCACTGGGGCATAAAATTGAGCAAATCATCTTCTGTTGAGGAACTTTTACAGATATTGACCCTATTTGAGAGATCACTACGGCGAGATTTTCTGTCATCGAACTTCTCTACAACAGATGAATTGTTGGGATCAAGCAGTATGTCGGAAAGTTCTGTGCAGGCTTCAACTGATCCTGAGTCTGTTGCTGTGCTTCCATGGGTTCCACTAACGACTGCAGCTTTGTCTCTCAGGCTTTTTGAGATTGATTCATCCATCAGCTATGTAAAGCTTGAAAGACTTGAGCCTTGTGAGGAGAAAGAAGCAAGAGAATACATAAAGCTTCCATCAAGATACACTCACATGAAATCTAATAGGGAGGTTGAACCAGCAGAATTTGTCCATGATCATTTCACTAAAGATAAATCTGTTCCTAAGAAAATTGTACGAAGTGGCAATAAACGTGGTCGAGGGACTAATGAACAAGGACGGGGTAAAAAGCTGGCTAAAAGAGTGTGCAATTCCAAACGAGATGGTGGTCGCAAGAATGCCAAGGTCACTGACAATCTAAGTCACAAATTAAAACAGCAGGCGCGTGGAACACAAGGACAGGGTGCTGGGCGAGGTCGCCGAACAGTAAGGAAGCGGAGAGTGGGTAAGAGAGCTGTTGAAGATTTGTTGTTGGGCCATACGACAGCCAGTCATAGCTCCAAGATTGATAGAGAACCATTGAGAAACTTGGATGATGAGGAATGGGATGGAGAAAAGGCAAGTCCCATGACTCCGGTACACATTGGGGTTGCTGCTGACAATAGTAATAGTGCTGAAGAGGTGGAATCTGATGACGACAATGCTCAAGCTGTGGAATATGATCAAGGAAACTGGGAGGTGGGTTTTAATGGTGTTCCCCCCAACAGATGGAGTAGGGATTTGGTTGGAATGAGTGACGAAGATGTGGATGCTTTTGAAGATGATAATGACAATGACAATGGCATTGAAGAGAATGAAGAGGATTCAGAAGCAGATGGTATGAGTGAGGGTTCAGATGGGATGGCAAATAGGGTAGTGAATGTTGGAGGCTCAGACTCGGCTTTGTCTGAAGATTCTTCTGATTAG 5193 0.4319 MEAEAEDNAVKREENSNENNNNNNYNESNSKIGNSSEGQSKPKRQMKTPFQLETLEKAYAVENYPSETMRAELSEKLGLSDRQLQMWFCHRRLKDKKDLPSKKPRKGAALPDSPVEEPKLGPEVGVEYGSGSGSGSSPLNRSELRNVVPRGYYESPQTIMELRAIACVEAQLGEPLREDGPILGVEFDPLPPDAFGAPLAVTEQQKRPSLAYDSKIYERHDVRTNKAIARTFHEYPFLPNQSGIRSDVYGQLNLPHLHDPMEGPTRTPFPLGNEQQPRIHAPQSHSSRVRLLSQQQDKQVIPYPSPPQDNDIALKREPHTNITNTGMNSHFTDHPIVGQENPYALPGGQVSHNDAVLRVERKRKSDEVKVAKEVEAYEMRMRKELEKQDNLRRKSEERLKKEMERQDRERRKEEERLMREKQREEERSRREQRREMERREKFLLKEHLRAEKRRQKEEIRKEKEEERRKAALEKANARRIAKESMELIEDEQLELMELAAASKGLSSIIHIDLDTLQNLESFRDSLCVFPPKSVKLRKPFSIQPWINSEQNIGNLLMVWRFLITFADVLDLWPFTLDEFVQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPSTGLGMNQNGAANPGGGHPEIVEGAYAWGFDIRNWQKNLNQLTWPEIFRQLALSAGLGPQLKKRNITWSYAIDKDEGKSCEDIISTLRNGSAAESAVAKMQERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRDAFRKNPADADSILSDARKKIQIFENGFLAGEDADDVEREEESESDEVDEDPEDDELVNPSNLIQNEFDTDLPCFPKNGSKDADCPSSVTRQPVACEDLNAGNLDQDNMEIDESKSGESWILGLAEGEYSDLSVEERLNALVALVGVANEGNSIRVVLEDRLESANALKKQMWAEAQIDKVRLKDDNISKLDFPSLTGNKVETPYTYPAVQGNQSPMLDININNINNEASPSTAENQKGAPVAQSMPMEKSSSIQDFGTATGTDTPQMQVPAQYSKRSRSQLKSYIAHIAEEMYVYRSLPLGQDRRHNRYWQFVASASSNDPGSGRILVEYHDGKWRLIDSEEAFDALLTSLDSRGIRESHLRLMLQKIENSFKENVRKRNARCAKNGSRGEVSIKIEANETCSIPDQNAGSDSPSSTLHDLNTDPSETSSSFQIELGKTESEKKAALRRYQDFQKWLWKECYNSSVLCAMKYGIKRCKPQMDICDICLNLYFVEDSHCNSCHRTFPSNNGFNFSKHAFQCRDKLSKDNCILEYSLPLRTRLLKVLLACMEVSVLSEAFETNWIDDIRKHWGIKLSKSSSVEELLQILTLFERSLRRDFLSSNFSTTDELLGSSSMSESSVQASTDPESVAVLPWVPLTTAALSLRLFEIDSSISYVKLERLEPCEEKEAREYIKLPSRYTHMKSNREVEPAEFVHDHFTKDKSVPKKIVRSGNKRGRGTNEQGRGKKLAKRVCNSKRDGGRKNAKVTDNLSHKLKQQARGTQGQGAGRGRRTVRKRRVGKRAVEDLLLGHTTASHSSKIDREPLRNLDDEEWDGEKASPMTPVHIGVAADNSNSAEEVESDDDNAQAVEYDQGNWEVGFNGVPPNRWSRDLVGMSDEDVDAFEDDNDNDNGIEENEEDSEADGMSEGSDGMANRVVNVGGSDSALSEDSSD 1730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00790 1730 MobiDBLite consensus disorder prediction 832 855 - -
Pumo2g00790 1730 MobiDBLite consensus disorder prediction 15 47 - -
Pumo2g00790 1730 SMART HOX_1 40 102 IPR001356 GO:0003677
Pumo2g00790 1730 MobiDBLite consensus disorder prediction 1516 1548 - -
Pumo2g00790 1730 ProSiteProfiles 'Homeobox' domain profile. 38 98 IPR001356 GO:0003677
Pumo2g00790 1730 MobiDBLite consensus disorder prediction 1509 1579 - -
Pumo2g00790 1730 Coils Coil 374 480 - -
Pumo2g00790 1730 CDD homeodomain 43 97 IPR001356 GO:0003677
Pumo2g00790 1730 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 17 1730 IPR044977 GO:0006357
Pumo2g00790 1730 ProSiteProfiles HARE-type HTH domain profile. 731 800 IPR007759 GO:0006355
Pumo2g00790 1730 MobiDBLite consensus disorder prediction 388 435 - -
Pumo2g00790 1730 MobiDBLite consensus disorder prediction 1051 1073 - -
Pumo2g00790 1730 MobiDBLite consensus disorder prediction 1676 1703 - -
Pumo2g00790 1730 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 914 957 IPR028942 -
Pumo2g00790 1730 SMART testlast3 549 608 IPR018501 -
Pumo2g00790 1730 MobiDBLite consensus disorder prediction 97 142 - -
Pumo2g00790 1730 Pfam HB1, ASXL, restriction endonuclease HTH domain 731 799 IPR007759 GO:0006355
Pumo2g00790 1730 Pfam Homeodomain 41 97 IPR001356 GO:0003677
Pumo2g00790 1730 SUPERFAMILY Homeodomain-like 29 97 IPR009057 -
Pumo2g00790 1730 MobiDBLite consensus disorder prediction 1 51 - -
Pumo2g00790 1730 ProSiteProfiles DDT domain profile. 549 608 IPR018501 -
Pumo2g00790 1730 MobiDBLite consensus disorder prediction 1025 1044 - -
Pumo2g00790 1730 Pfam DDT domain 551 605 IPR018501 -
Pumo2g00790 1730 MobiDBLite consensus disorder prediction 1652 1730 - -
Pumo2g00790 1730 MobiDBLite consensus disorder prediction 97 112 - -
Pumo2g00790 1730 Gene3D - 25 99 - -
Pumo2g00790 1730 MobiDBLite consensus disorder prediction 1203 1233 - -
Pumo2g00790 1730 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1095 1167 IPR028941 -
Pumo2g00790 1730 MobiDBLite consensus disorder prediction 829 858 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00790 Pumo-Chr2 12131614 12142652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00790 34 1659 Homeobox Transcription Factor Family AT1G28420 48.536 0.0 1311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pumo2g00790 WSD 9.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00790 - - gmx:100777465 2957.16