Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00784 ATGACATGGTGCAATGACTCTGATGAGGAGAGGGGCATTGAAGCAATCACGCCAACAATAACTATTACTCCTAACACTGATGTTACTGATGACATAAAGCTCACCGAAGAAATTAGAACTTTAACATGCCCCTCGTGTGGCCATAACATTGAATTCAAAGATCAGGGTGGAATTCATGACTTGCCGGGGTTACCAGCTGGAGTGAAGTTTGACCCGAATGACCAAGAAATATTAGAGCATTTAGAGGCAAAAGTGGCGTCTGATGCATGCAAGCTTCATCCCCTTATTGATGAGTACATACCAACGCTTGAAGGCGAGAATGGGATCTGTTATACACACCCAGAAAAGCTACCAGGAGTTAGCAAAGATGGACAGATCCGCCACTTCTTTCACAGGCCTTCAAAAGCATACACAACTGGAACAAGGAAAAGAAGAAAGGTTCACACTGATAATGAAGGAAGTGAAACAAGATGGCACAAAACGGGAAAAACTAGAGCAGTTTTTGCAGCTGGTGGTGCAGTAAAAGGTTTTAAGAAAATACTAGTACTCTACACCAACTATGGCAGGCAAAAGAAGCCTGAGAAGACTAATTGGGTGATGCATCAATACCATCTTGGCAGTAGTGAAGAAGAGAAAGATGGAGAATTAGTTGTTTCAAAGGTCTTCTATCAGACACAACCTAGACAATATGGTAATCCCATTATCATAAAGGATCCGTACGAAAAAATGTTGAATGATGGAAGTGGCCATGACAACAATACATCAATACCTAAAACTGCAACTCTTGTGGATTGCTACAATGCTCCTTACATAAATTATGATCATGTCCATATGAGTCATAATAGGGAAAGTTCCCCACAACTAATTATTCCCAGCTCGGTTGTTCAGGTTGATGGCTCTTATATTCGCTTAACAATGGATGCAAAGAAAGCAAGATTTGAAAGTAACACTGGGAAGAGCTTCTAG 966 0.4099 MTWCNDSDEERGIEAITPTITITPNTDVTDDIKLTEEIRTLTCPSCGHNIEFKDQGGIHDLPGLPAGVKFDPNDQEILEHLEAKVASDACKLHPLIDEYIPTLEGENGICYTHPEKLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHTDNEGSETRWHKTGKTRAVFAAGGAVKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSSEEEKDGELVVSKVFYQTQPRQYGNPIIIKDPYEKMLNDGSGHDNNTSIPKTATLVDCYNAPYINYDHVHMSHNRESSPQLIIPSSVVQVDGSYIRLTMDAKKARFESNTGKSF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00784 321 Pfam No apical meristem (NAM) protein 65 205 IPR003441 GO:0003677|GO:0006355
Pumo2g00784 321 Gene3D NAC domain 73 228 IPR036093 GO:0003677|GO:0006355
Pumo2g00784 321 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 35 263 IPR044799 GO:0003700
Pumo2g00784 321 FunFam NAC domain-containing protein 73 73 228 - -
Pumo2g00784 321 ProSiteProfiles NAC domain profile. 64 224 IPR003441 GO:0003677|GO:0006355
Pumo2g00784 321 SUPERFAMILY NAC domain 58 224 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00784 Pumo-Chr2 12055326 12059198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00784 1 234 NAC Transcription Factor Family AT4G28500 71.489 3.02e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo2g00784 NAM 3.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00784 - - gmx:100809389 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00784 2 12055326 12059198 Pumo2g00784 2 12055326 12059198 ECH