Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00780 ATGGGGTTGATCGATCTGAACACCACGGAGGATGATGAAGCTCCATTATCTGCTTCTTCTTCTGCTTCATCTTCTTCTTCTCACTCAGGGATAAGCACTTCTGCTTCAACCTTGCTTGTTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTGTGTGCTTGGAACTGTGGCACGCGTGTGCGGGCCCTTTGATCTCTCTGCCGAAGAAAGGAAGTGTTGTTGTGTACTTGCCACAGGGACACTTTGAGCATGTTCAGGATTTTCCGGTCACTGCTTATAATATCCCACCCCATGTGTTCTGTCGTGTTCTTGATGTCAAGCTCCATGCAGAGGAAGGGAGCGATGAAGTGTATTGCCAAGTGTTGTTGGTTCCTGAAAGTGAGCAAGGGGAGCAAAGCTTGCGGGAAGGGGAAATTGATGCTGATGGGGAAGAGGAGGATACTGAAGCTATGGTGAAGTCAACAACTCCCCATATGTTCTGCAAGACTCTCACAGCTTCAGACACCAGCACTCATGGTGGATTCTCAGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCCCTGGATTACAGTCAACAGAGACCTTCACAGGAGCTTGTGGCAAAGGATCTTCATGGCCTGGAATGGAGGTTTCGTCATATATATAGGGGCCAACCACGGAGGCATTTGCTCACAACTGGGTGGAGTGCATTTGTGAACAAAAAGAAGCTTGTTTCTGGAGATGCTGTGTTGTTTCTTAGGGGTGACGATGGAGAACTGAGATTAGGGATTCGTAGAGCAGCTCAGTTGAAAAGTGCTGGTTCCTTTGCAGTTCCCTCTGGTCCGCAACTGAATCCTGCAACTCTCACGGATGTTGTTAATGCATTATCTACAAGATGTGCATTTAGTGTTTGCTACAATCCTAGGTTCAGCTCTTCGGAATTCATCATACCTGTTCACAAATTCTTGAAGAGCCTTGACTGTTCTTATTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCGGCAGAGCGAAGATTCACTGGATTAATTGCTGGAATTAGTGATGTTGATCCTGTTAGATGGCCTGGATCAAAATGGAGATGCGTACTGGTAAGGTGGGATGACATAGAAGCTGCTAGGCACAATAGGGTTTCCCCATGGGAAATTGAGCCATCTGGTTCTGCTTCAAATTCCAGTAACTTGATGGCAGCTGGTTTGAAGAGGACCAGGATTGGAATGACTTCAGCAAAGCTGGAATTTCCCACTCCCAATGGGATTGGAACATCAGACTTTGGGGAATCATTAAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATACTCCCTTTGATGGTGTTAATGCTCAGAGTCCCCGGTTATATGAGTTAGGGAGGTGCTATCCTGGTTCAAACTGTTCTGGGATTCCTCCAACAGGAAATAACATCAGAATGCCGCATCCGGCATCTGATATTTCCTGCTGCAATGGCATAGGCTTTAGTGAATCTTTCCGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTCTTCCAAGCCAACCATATGGAAGAGCCTTGTCGATCGAGGAGGCTCGAGCAAATGGTCGCTTTGGACATTTTGATGGTTATCAGTTGCTTAACTCCAGAAATGGATGGTCTACACAGATGCATGACAACGCTCCGCATTTGCATGCATCTGTCACACCTGCACAAGTGTCATCTCCATCATCTGTGTTAATGTTCCAGCAAGCAGTTAATCCAGTTTCAAACTGTGATTATAATAATATCAAACGTAATAAGGAAATGGAGGGTAGAGTCCATTACCAAGGTTTATACACATCTGAAGTGAAAGGTAGAACATTTGCATCTTCCCCATCTGACGATCTTATTTTCTCTAGGCGAGCTCCGGAAGGTGCTAGTTCTTTAGGTATGTTTGATGTTCATAATCAGTTGGGTAGTTCACGGCCACATGAATCAGCATTGAGAAGCAGTCAAGAGTTGGTTTCCTCATGTAAAAGTAGTTGCAGACTCTTTGGTTTTTCATTGACTGAGGACACACATGTTGCAAATAAAGAGGCTGATGCCTCTACCATCACTTTACCCCTGAATGCTGGACCTTCCTTTACTAGACTTGTTGAAGATGAGTTCCATCCTGGCCACTCGCTTCCGAGTAAGGCGGTTGGAAGTAACTGCACCAAAGTAAGTGATCTATGTATCCTGTCCTAG 2220 0.4581 MGLIDLNTTEDDEAPLSASSSASSSSSHSGISTSASTLLVPPPPPPPPPSVCLELWHACAGPLISLPKKGSVVVYLPQGHFEHVQDFPVTAYNIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPESEQGEQSLREGEIDADGEEEDTEAMVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAAQLKSAGSFAVPSGPQLNPATLTDVVNALSTRCAFSVCYNPRFSSSEFIIPVHKFLKSLDCSYSVGMRFRMRFETEDAAERRFTGLIAGISDVDPVRWPGSKWRCVLVRWDDIEAARHNRVSPWEIEPSGSASNSSNLMAAGLKRTRIGMTSAKLEFPTPNGIGTSDFGESLRFRKVLQGQEILGVNTPFDGVNAQSPRLYELGRCYPGSNCSGIPPTGNNIRMPHPASDISCCNGIGFSESFRFQKVLQGQEILPSQPYGRALSIEEARANGRFGHFDGYQLLNSRNGWSTQMHDNAPHLHASVTPAQVSSPSSVLMFQQAVNPVSNCDYNNIKRNKEMEGRVHYQGLYTSEVKGRTFASSPSDDLIFSRRAPEGASSLGMFDVHNQLGSSRPHESALRSSQELVSSCKSSCRLFGFSLTEDTHVANKEADASTITLPLNAGPSFTRLVEDEFHPGHSLPSKAVGSNCTKVSDLCILS 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00780 739 Pfam B3 DNA binding domain 159 260 IPR003340 GO:0003677
Pumo2g00780 739 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 50 688 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo2g00780 739 FunFam Auxin response factor 322 393 - -
Pumo2g00780 739 Pfam Auxin response factor 286 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo2g00780 739 MobiDBLite consensus disorder prediction 12 37 - -
Pumo2g00780 739 Gene3D - 157 261 IPR015300 -
Pumo2g00780 739 ProSiteProfiles B3 DNA-binding domain profile. 159 261 IPR003340 GO:0003677
Pumo2g00780 739 MobiDBLite consensus disorder prediction 1 46 - -
Pumo2g00780 739 SUPERFAMILY DNA-binding pseudobarrel domain 152 265 IPR015300 -
Pumo2g00780 739 CDD B3_DNA 157 259 IPR003340 GO:0003677
Pumo2g00780 739 FunFam Auxin response factor 157 261 - -
Pumo2g00780 739 SMART B3_2 159 261 IPR003340 GO:0003677
Pumo2g00780 739 Gene3D - 322 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00780 Pumo-Chr2 12013232 12018755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00780 158 517 B3 DNA Binding Superfamily AT2G33860 59.341 3.25e-144 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo2g00780 B3 3.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00780 K14486 - gmx:100789906 1333.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00780 2 12013232 12018755 Pumo2g00780 2 12013232 12018755 ECH