Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00746 ATGGGTTCTAAAGACAAAGATGATGAGCAATCACTTGGTATAGATCTTCAGGTGATGCTAGCAGCAGCTTTCTCTTTATTTGGTATGATCTTATTAATCATAATCTTCCATTTTAGTGTAAAATGTTTCATTAGACGCCAACAAAGGAGACGCCAAAGCGACCTACTTTATCAGATCAGCACTCAAATTGCACCAATTGATGTGAGTTCTGTGGAGCCACGCAACTCTGGCCTTGACCCTTCGATCATAGACTCTCTGCCTAAACTCTTGTACAAGGAAACGGACCAGTTCAAGCAAGGTGAAGTTATAGAGTGCTCGGTTTGCTTAGGCACTATTGTGGAGGATGCAATTACTAGGGTGCTACCAAATTGTAAGCACATTTTTCATGTTGATTGTGTTGATAAATGGTTTAATTCTAACACCACATGCCCAATTTGCCGCACTGTGGTTGACCCAAAGGTGCAACCAGAACATGGTCATTTAGCCACACAGGTTCACCACCAAGTCCAACCCACAGCACCACCGGTTGAAGGTGGTGATGAACTACAAGATGGTAGTGAATTGCAGAGGGTGGGGTGTTCAGGTTTGAGAATAGGGTCTTTTCATAGAATGGTTAGTAACAGGGAATGA 630 0.4286 MGSKDKDDEQSLGIDLQVMLAAAFSLFGMILLIIIFHFSVKCFIRRQQRRRQSDLLYQISTQIAPIDVSSVEPRNSGLDPSIIDSLPKLLYKETDQFKQGEVIECSVCLGTIVEDAITRVLPNCKHIFHVDCVDKWFNSNTTCPICRTVVDPKVQPEHGHLATQVHHQVQPTAPPVEGGDELQDGSELQRVGCSGLRIGSFHRMVSNRE 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00746 209 SMART ring_2 105 146 IPR001841 -
Pumo2g00746 209 SUPERFAMILY RING/U-box 82 154 - -
Pumo2g00746 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 153 IPR013083 -
Pumo2g00746 209 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Pumo2g00746 209 FunFam E3 ubiquitin-protein ligase ATL6 67 153 - -
Pumo2g00746 209 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 26 156 - -
Pumo2g00746 209 Pfam Ring finger domain 104 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00746 Pumo-Chr2 11676186 11677169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00746 1 157 C3H Transcription Factor Family AT2G42360 33.526 3.04e-28 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00746 K19038 - gmx:100779105 372.474