LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo2g00699	ATGGCCGACGTCGTTTCGAAGACCCCAACCAGCAGCCTCATCAGCTCCAACAACAAGAAGGAACCATCGAACCTTTTACTCAACCGCTTCGAGATTGGGAAGCTCCTGGGCCATGGAACCTTCGCGAAGGTGTACTACGCGCGCAACGTCAAAACCGGCGAAGGCGTGGCCATCAAGGTAATCGACAAGGAGAAGATCCTCAAGGGCGGTTTGGTGGCACACATCAAGCGCGAGATCTCCATTCTCCGCCGCGTGCGCCACCCCAATATCGTGCAACTCTTCGAAGTCATGGCCACCAAGAGCAAGATCTATTTCGTAATGGAATACGTCCGCGGGGGTGAGCTCTTCAACAAGGTCGCGAAGGGGAGGCTCAAGGAAGAGGTTGCGAGAAAGTACTTTCAGCAATTAATCTCCGCGGTGGGGTTCTGCCACGCCAGGGGGGTGTACCACAGAGATCTCAAGCCTGAAAATTTGTTGCTTGATGAGAATGGTAATCTGAAAGTCTCTGACTTTGGGTTGAGTGCGGTGTCTGATCAAATCAGACAGGACGGTCTGTTCCACACTTTTTGTGGGACACCTGCGTATGTTGCTCCCGAGGTTTTGGCGAGGAAAGGGTACGATGGTGCCAAGGTGGATCTCTGGTCTTGTGGGGTGGTGTTGTTTGTGTTGATGGCGGGGTATTTGCCTTTTCATGACCAGAATGTGATGGCAATGTATAAGAAGATTTATAGAGGGGAGTTTCGGTGTCCGAGGTGGTTTTCTCCTGATTTGTCGAGGCTTCTCACGAGGCTTCTTGATACCAAGCCTGAGACTCGGATTGCTATTCCTGAGATTATGGAGAACAAGTGGTTTAAAAAGGGGTTCAAGCAGATCAAGTTTTATGTGGAGGATGATAGGCTTTGTAATGTGGTGGATGATGATGGGCTTATGGATAATGATGATGATACTGCTTCTATTGCTTCTTTTTCGGATTACTCGATTTCGGAGTCTGATTCTGAGGTTGAGACTAGGAGGAAGAACAATGCTGCTCCCTTGCCTAGGCCTCCTAGTTTGAATGCCTTTGACATTATATCGTTCTCTCCGGGTTTCGATCTTTCGGGGTTGTTTGAGGAGAAAGGGGATGAGACGAGGTTTGTGACTACTGCACCGGTGAACAGGATTATTTCCAAGTTGGAGGAGATTGCTCAGTTGGTTAGGTTTTCCGTGAGGAAGAAGGATTGCAGGGTGAGTTTGGAGGGTACCAGAGAGGGGGTTAGGGGGCCTTTGACTATTGCTGCTGAGATTTTTGAGTTGACACCTTCTTTGGTTGTGGTGGAGGTGAAGAAAAAGGGAGGGGATAGAGCTGAGTATGAGAGGTTTTGTAACAATGAGTTGAAGCCTGGACTGCAGAATTTGATGGTGGAAGAGTCTTCATCTTCTTCAGGGTTGTCTACACCTACTCAACCTTCCCTACTACGTGGCCTTTCTGAACCTGTGCCAGATATTTCTTCTGATATTGAAACCACCCCTCGCTATATACCTTCTGATACTTGA	1533	0.4873	MADVVSKTPTSSLISSNNKKEPSNLLLNRFEIGKLLGHGTFAKVYYARNVKTGEGVAIKVIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKSKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLISAVGFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDLWSCGVVLFVLMAGYLPFHDQNVMAMYKKIYRGEFRCPRWFSPDLSRLLTRLLDTKPETRIAIPEIMENKWFKKGFKQIKFYVEDDRLCNVVDDDGLMDNDDDTASIASFSDYSISESDSEVETRRKNNAAPLPRPPSLNAFDIISFSPGFDLSGLFEEKGDETRFVTTAPVNRIISKLEEIAQLVRFSVRKKDCRVSLEGTREGVRGPLTIAAEIFELTPSLVVVEVKKKGGDRAEYERFCNNELKPGLQNLMVEESSSSSGLSTPTQPSLLRGLSEPVPDISSDIETTPRYIPSDT	510

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo2g00699	510	SMART	serkin_6	30	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo2g00699	510	Gene3D	Kinase associated domain 1, KA1	346	467	-	-
	Pumo2g00699	510	ProSitePatterns	Protein kinases ATP-binding region signature.	36	59	IPR017441	GO:0005524
	Pumo2g00699	510	FunFam	Non-specific serine/threonine protein kinase	21	109	-	-
	Pumo2g00699	510	Gene3D	Transferase(Phosphotransferase) domain 1	20	342	-	-
	Pumo2g00699	510	MobiDBLite	consensus disorder prediction	467	485	-	-
	Pumo2g00699	510	MobiDBLite	consensus disorder prediction	467	510	-	-
	Pumo2g00699	510	ProSiteProfiles	NAF domain profile.	346	370	IPR018451	GO:0007165
	Pumo2g00699	510	CDD	STKc_SnRK3	29	283	-	-
	Pumo2g00699	510	FunFam	Non-specific serine/threonine protein kinase	19	340	-	-
	Pumo2g00699	510	CDD	CIPK_C	352	463	-	-
	Pumo2g00699	510	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	148	160	IPR008271	GO:0004672\|GO:0006468
	Pumo2g00699	510	Pfam	Protein kinase domain	30	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo2g00699	510	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	18	460	-	-
	Pumo2g00699	510	SUPERFAMILY	Protein kinase-like (PK-like)	26	285	IPR011009	-
	Pumo2g00699	510	ProSiteProfiles	Protein kinase domain profile.	30	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo2g00699	510	Pfam	NAF domain	348	404	IPR004041	GO:0007165
	Pumo2g00699	510	FunFam	Non-specific serine/threonine protein kinase	348	466	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo2g00699	Pumo-Chr2	11065994	11068169	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo2g00699	19	510	CBL-interacting serine-threonine protein kinases	AT4G18700	74.900	0.0	754

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Pumo2g00699		Pkinase	6.8e-73	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo2g00699	-		-	gmx:100790133	915.99