Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00686 ATGGGAGCAGTGAGTGATGGAAGCCGCAGCAGCAGAAAGAAGACATCATCAAGAGGGCACCACAGGTTTGTGGGGGTTAGACAAAGGCCATCAGGGAGATGGGTGGCAGAGATCAAAGACTCTCTACAAAAGGTTAGGCTTTGGCTTGGAACATTCGACACTGCTGAGGATGCAGCTCGAGCATATGACAATGCTGCTCGAGCCTTGAGAGGTGCCAATGCTAGAACCAACTTTGAATTGCCAGAGTCAGCTTCTTCTGGTGGTGCTGCTAAGCGTGGTTCCAACTTCATGCCTGATTTCACCGAACCCTTTTCTTTTGAGGATGCTAATGAGCCGGGTTCAGAAGCTGAAGGCCTTCTTGGTGCACTTAAGGCAAAGCTGCTTGATGGAAAGGAAGGGAAGTTTCAATTTCAATTTCTTGGTAATTGTGCTGCCCCAGGTGTTCAATCTGGCATGGTTTCAAGGTCAACTCAGAACTGTTCTGGGAAGAAAGAGTTACTATTACCATCATCAGCTAATAATACTGTCCTCTCATCAAGGATGAATGGAACAGGAACTGGAACCAGCCCTGTGCATGGTGTAATGACTAATTTATCTTCATCAAACACGTGTGCCAAGAGTGTGGTTATCCCAAATCATGATCATCATGAAGGTGCTGTAGCAAGCAGTGCTAGAGTCAACTCTCATCAACTTTGTCAAAGCACACCACCTGTGGCAACATGGCCCAATGAAGTGGCATATGATTTGCCTTGGCCTACACAATATATGAGCCAAGTTCCTGATAATAGCCTTCTTGCATCTTCCAGTGCTGCAGCCACCTTGACTACATGGCCACTTATTGAGTCTACTGTTGATATGCCATGCTTAGATCAGGGACCATCAAGTAGTAGCAACAAAAGTGGCCAAATGATGAATATGCTGAGCATGCAGTTGCCTCTAGTTGGTGGTGCAACTGAAGGCCTTTGGACATTGGAGCAGCAACAATTTGTGCAATGTGAGAACAACAACAGTTGGTTTAGTTTTAATGGCTCTTGGGATCCTCTCCTCTATGTGCCCTCTGAGCTAGCTTGA 1071 0.4631 MGAVSDGSRSSRKKTSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDNAARALRGANARTNFELPESASSGGAAKRGSNFMPDFTEPFSFEDANEPGSEAEGLLGALKAKLLDGKEGKFQFQFLGNCAAPGVQSGMVSRSTQNCSGKKELLLPSSANNTVLSSRMNGTGTGTSPVHGVMTNLSSSNTCAKSVVIPNHDHHEGAVASSARVNSHQLCQSTPPVATWPNEVAYDLPWPTQYMSQVPDNSLLASSSAAATLTTWPLIESTVDMPCLDQGPSSSSNKSGQMMNMLSMQLPLVGGATEGLWTLEQQQFVQCENNNSWFSFNGSWDPLLYVPSELA 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00686 356 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Pumo2g00686 356 MobiDBLite consensus disorder prediction 1 26 - -
Pumo2g00686 356 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Pumo2g00686 356 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Pumo2g00686 356 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Pumo2g00686 356 SUPERFAMILY DNA-binding domain 23 79 IPR016177 GO:0003677
Pumo2g00686 356 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 16 199 - -
Pumo2g00686 356 FunFam ethylene-responsive transcription factor RAP2-11 21 80 - -
Pumo2g00686 356 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Pumo2g00686 356 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Pumo2g00686 356 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00686 Pumo-Chr2 10942056 10943126 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00686 12 78 AP2-EREBP Transcription Factor Family AT5G19790 69.118 2.75e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo2g00686 AP2 3.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00686 - - gmx:102661478 540.036