Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00677 ATGGATCAAAACAGAAGCGAAGGAAGAGGTGAGGTAGTATTGGGTCCGGTTCATGAAGGGGAAGATGGGAATTTGAGTCATTTGGTTGAAGGGGTTGTAGTTGTAATTGATGCAGTAGATGGGAGCAGCTTGGGTGGAAGAGTTAATATAAGTGGAGAAGCTGGAACTTCAGGAGAGGTTGGTAAGGATTTGGGATCTGATAAGGAGCTAAAGGAGGGGCTTGAGGAAGTTAAGGTTCTGGACAAGCATGATCAAGAAAATATCAGTGATAATAAATTGCTTGGGATTGATCAGGGAACTAGTTATAATTCAAACCATTTGGTTAATCAGGAAGTGATTGAAACTGTGATTGTAATTGAGTCTGTTCAGACTGAGTATGTCGATGAAGATAATAGGAAATTGGAAGCAAAAGTTAATGAATCAGGGTTGAGCCTGGTATCCATGAAAGCACCAGAAGGGGTGTCTGAAACTGATAAAAATTCATGTGTGATTGATATAAAGTGCAGCAGCTGCAAAAAGGTTTATGAGAATTCTGATGGTGAAAGGATTTGTAGGATTTGCCATCTGACTTCTGTGCAACCATCGGATGAAACAACTGTTGGCACTGCTAGTAGTGCTACAATTGAAGATTTGATTCAGCTCGGTTGTGCATGTAAAGATGAGCTAGGTATTGCGCATGTTCATTGTGCTGAGGCGTGGTTCAAGCTTAAGGGGAACAGGTTATGTGAAATATGTGGTGAGACTGCAAAAAATGTTTCGGGTGTTGCTGATTATGGATTTATGGAGAAGTGGAATGAAAGAAGATTCATGGACGACGGTGGTAACTCGTCCCGCAGGTTTGGTGGATGCTGGCGAGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTAATAGCATTTGTTCTGCCATGGTTTTTTCGTGTAAATATGTTCTAG 939 0.4164 MDQNRSEGRGEVVLGPVHEGEDGNLSHLVEGVVVVIDAVDGSSLGGRVNISGEAGTSGEVGKDLGSDKELKEGLEEVKVLDKHDQENISDNKLLGIDQGTSYNSNHLVNQEVIETVIVIESVQTEYVDEDNRKLEAKVNESGLSLVSMKAPEGVSETDKNSCVIDIKCSSCKKVYENSDGERICRICHLTSVQPSDETTVGTASSATIEDLIQLGCACKDELGIAHVHCAEAWFKLKGNRLCEICGETAKNVSGVADYGFMEKWNERRFMDDGGNSSRRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00677 312 SMART ringv_2 183 246 IPR011016 GO:0008270
Pumo2g00677 312 Pfam RING-variant domain 184 245 IPR011016 GO:0008270
Pumo2g00677 312 ProSiteProfiles Zinc finger RING-CH-type profile. 176 252 IPR011016 GO:0008270
Pumo2g00677 312 PANTHER ZINC FINGER, RING-CH-TYPE 82 312 - -
Pumo2g00677 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 250 IPR013083 -
Pumo2g00677 312 SUPERFAMILY RING/U-box 180 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00677 Pumo-Chr2 10760672 10763900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00677 164 311 C3H Transcription Factor Family AT5G05830 39.744 5.33e-30 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00677 - - gmx:100791720 532.717