Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00670 ATGGGAGCAGTGAGTGATGGAAGCCGCAGCAGCAGAAAGAAGACATCATCAAGAGGGCACCACAGGTTTGTGGGGGTTAGACAAAGGCCATCAGGGAGATGGGTGGCAGAGATCAAAGACTCTCTACAAAAGGTTAGGCTTTGGCTTGGAACATTCGACACTGCTGAGGATGCAGCTCGAGCATATGACAATGCTGCTCGAGCCTTGAGAGGTGCCAATGCTAGAACCAACTTTGAATTGCCAGATTCAGCTTCTTCTGGTGGTGCTGCTAAGCGTGGTTCCAACTTCATTCCTGATTTCACCGAACCCTTTTCTTTTGAGGATGCTAATGAGCCGGGTTCAGAAGCTGAAGGCCTTCTTGGTGCACTTAAGGCCAAGCTGCTTGATGGAAAGGAAAGGAAGTTTCAATTTCAATTTCTTGGTAATTGTGCTGCCCCAGGTGTTCAATCTGGCATGGTTTCAAGGTCAACTCAGAACTGTTCTGGGAAGAAAGAGTTACTATTACCATCATCAGCTAATAATACTGTCCTCTCATCAAGGATGAATGGAACAGGAACTGGAACCAGCCCTGTGCATGGTGTAATGAGTAATTTATCTTCATCAAACACGTGTGCTAAGAGTGTGGTTATCCCAAATCATGATCATCAAGAAGGTGCTGTAGCAAGCAGTGCTAGAGTCAACTCTCATCAACTTTGTCAAAGCACACCACCTGTGGCAACATGGCCCAATGAAGTGGCATATGATTTGCCTTGGCCTACACAATATATGAGCCAAGTTCCTGATAATAGCCTTCTTGCATCTTCCAGTGCTGCAGCCACCTTGACTACATGGCCACTTATTGAGTCTACTGTTGATATGCCATGCTTAGATCAGGGACCATCAAGTAGTAGCAACAAAAGTGGCCAAATGATGAATATGCTGAGCATGCAGTTGCCTCTAGTTGGTGGTGCAACTGAAGGCCTTTGGACATTGGAGCAGCAACAATTTGTGCAATGTGAGAACAACAGTTGGTTTAGTTTTAATGGCTCTTGGGATCCTCTCCTCTATGTGCCCTCTGAGCTAGCTTGA 1068 0.4607 MGAVSDGSRSSRKKTSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDNAARALRGANARTNFELPDSASSGGAAKRGSNFIPDFTEPFSFEDANEPGSEAEGLLGALKAKLLDGKERKFQFQFLGNCAAPGVQSGMVSRSTQNCSGKKELLLPSSANNTVLSSRMNGTGTGTSPVHGVMSNLSSSNTCAKSVVIPNHDHQEGAVASSARVNSHQLCQSTPPVATWPNEVAYDLPWPTQYMSQVPDNSLLASSSAAATLTTWPLIESTVDMPCLDQGPSSSSNKSGQMMNMLSMQLPLVGGATEGLWTLEQQQFVQCENNSWFSFNGSWDPLLYVPSELA 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00670 355 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Pumo2g00670 355 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Pumo2g00670 355 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Pumo2g00670 355 MobiDBLite consensus disorder prediction 1 26 - -
Pumo2g00670 355 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 16 196 - -
Pumo2g00670 355 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Pumo2g00670 355 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Pumo2g00670 355 SUPERFAMILY DNA-binding domain 23 79 IPR016177 GO:0003677
Pumo2g00670 355 FunFam ethylene-responsive transcription factor RAP2-11 21 80 - -
Pumo2g00670 355 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Pumo2g00670 355 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00670 Pumo-Chr2 10681833 10682900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00670 12 78 AP2-EREBP Transcription Factor Family AT5G19790 69.118 2.73e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo2g00670 AP2 3.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00670 - - gmx:102661478 531.561