Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00664 ATGACTAGGGCTGTCCGTAGTAGGGTACTTAAAGATGCCAATGGTGATATTAGTGATCATCTACGCAACCACATCCATTTGACAAATTGTATTCACCTGAAGAACCATATGCACAAGAACAGCCCCATCCTGGCTGATAGGTCAATCATGAGGGACCTAGTTGTGCTGCAAAGATCGCGGTCCCTTAGAGACCCTTCTGCAAGTCCTCCATCATGGCACTCGCCTTCTGTAGTTGACTTGCTTTTCAAAAGAGTTGAAAATGATGCCGTGTCTCAGGGGGGAAGAAGGTCTGTAGGTATTGAGCGCAGGAAGGAAGGGAGAAGATTGTCCGGAACTTCACCACCCTTGGTGAGTATAGGTTCATCAAGAGTTGCTCCAGGTGAGGTTGGTAGGGGTAATGATGGGATAACGGCACCTAGTGAACGTAGTAGTAGGAGTGGAATGGGAGATGGAAGGAAAGTTGGGAGAGAAGAATCTGGTAGGAAGAATGATAGGCCTGACTTTTTGGATGTTAATCAAGAGGAGCCTCTCAATCAAGCTGGCAAAAGCTTGGCTGAAGATGTTATTTCAAGGCACTCAGTGTCTAAAGATAGAAAGAGCAAACAGAGGGGGAAGAATGTTCGAGATGTTCAAGTTAAGACCCTTTCTGAGCAGCTGAATGATGTTCCATTGGATAGTGATGATTTAGCATCATCAAACATTCATTTTCGTGGAAGGTTTCCTAGACAGGAGAAAATTATTGAGGAGGTAGAAGCCCGGATGCGCAGTCATGGCAGTGGAATGAATAGGGGGAAAAGGCGTAAGTTTCGAAGCGCGCGAAGAACACGGGTTGCTACAACATCAAGAGATATTGGAGCTGAGAATGAAATGTCTGTGGCTTCCAACTCATTAGCTCAGGCTTCAGCTCACCATAAATATCACTTGGAGGAGGCTGATGAGTTTGGAGATGAAAATGTTACCAGGGCTCCAAAAAATGGGTGTGGCATTCCTTGGAATTGGTCCAGAATTCATCATAGAGGTAAAACAATCCTTGACATGGCTGGAAGAAGTTTGTCTTGTGGTTTATCTGACTCAAGGTTGAAGAAAGGGGCATTTACTGCCAATGGAAGAAATATTTCTGAGATGCCTGTGGCATCTGAGCGCTCAAGCTCATGTACGAAGTCTGATGCAGAGGCACTGCCTTTACTAGTTGAGGCATCTGGATCTCATGCAAGCACTGAAAATGCTTGTTGGGATCGTGACTATTCTGGGGAACTAGGTCTTTTTGGTGATAATTTATTCAAGCATGATGTTGATTCTGACCTTGCTTCGGAAGCTAGATCTGGTGATCAGCGTAAGTTGAGAGGGAATCGTCACAGTAGACACCAAAGTTTAACACAAAAGTATATGCCTCGAACCTTCAGAGATATGGTTGGGCAGAATTTAGTGGCACAAGCTCTTTCCAACGCAGTTATGAAAAGGAAAGTTGGGTTGTTGTATGTGTTTTATGGCCCCCATGGCACTGGAAAAACTTCCTGTGCTCGCATATTTGCCAGAGCTCTGAATTGTAATTCTTCAGAACACCCAAAACCTTGTGGTTTTTGCAATTATTGCGTGGCACATGATATGGGCAAGAGTAGAAATATAAGGGAAGTAGGTCCAGTTAGTAATTTTGACTTTGAGAGCATCATGGACCTACTCGACAATATGATCGTTTCCCAGCTTCCGTCACATTACAGAGTGTTTATTTTTGATGACTGTGATACTCTGTCAACAGATTGTTGGAATGCTATATCGAAGGTCATTGATCGAGCACCTAGACGTGTGGTTTTTATCCTTGTCAGTTCTAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTCCCAAAGCTGAAGGATGCAGATATTATATATACACTGCAGTGGATTGCAACCAAAGAAGGTCTAGAAATTGATAAGGATGCCCTGAAACTCATTGCATCAAGGTCAGACGGATCTTTGAGAGATGCTGAGATGACCCTTGAACAACTTAGTTTGCTTGGGCAGAGAGTATCCGTTCCTCTTGTTCAGGAATTGGTAGGGCTAATCTCTGATGAGAAATTGGTGGATCTGCTTGATTTGGCATTATCTGCAGACACAGTTAACACCGTGAAGAATTTGAGAGTGATCATGGAAACTGGTGTCGAGCCATTGGCTTTAATGTCACAACTTGCTACAGTAATTACTGATATACTTGCTGGGACCTATGATTTCACAAAAGAAAGGCGAAGAAGGAAGTTCTTCCGGAGACAACCATTGTCCAAAGAAGACATGGAGAAGCTGCGCCAAGCTCTGAAAACTTTATCTGAGGCTGAGAAGCAGTTGAGGATGTCTAATGACAAGCTAACATGGTTGACGGCTGCCTTACTTCAGCTTGCTCCAGACCAACAATATGTGTTGCCAACTTCATCTGATAATAGTTTCAACCACAGTCCGTTCACTCTAAAAGATGCAGATGCGAGAGAAGCAGCTAGACTGACTGGTAATCCTGTTGACATTACTAACAAAGCGAGACGATTATCAATGGATGCTAGAATTGAAAATTTCCATGCTGGAAGCTCAGCAGATGGTATGACAAGGGGTCTTGGTTCTGAGAAAAAACGACATAGCGTGTCTGGTTTTACTCCTCAACATGCTCATTCACAAGCCACTGATAAGATTAGGATGAGTGAGAGGCAGATTTTGGGTAAAAACCGTAAAGAAATTGAAGAGATATGGTTAGAGGTTCTTGAGAGGATGCAAGTTACTGGCCTGAAAGAGTTTCTGTTTAAAGAAGGCAAACTGATCTCTGTTAGTTTTGGGGCAGCTCCAACTGTGCAGCTAATGTTTAGTTCTCAATTGACCAAATCTACTGCGGAGAAGTTCAGAGGTCACATCTTACAAGCATTTGAATCTGTCCTTGGATCTTCTATAACAATAGAAATTAGATGTGAGTTAAATAAAGATGCAGCCTCGGCTGTTCAACAACCTCTTACATTGCCTGCTACCAATGATAGTTCGTCTCAGATTAGAGACTTCAATGGTGTTGGCACTCTAGCTCATCCATCATTAACTGATTCTGTTGAAAAGAGAAAGGGTGAAATTGTAGAAGAAGCAGCTTCTCAAGTGGAGCACAAGAATAGCGAGCAGCAGGTTGATGCTCATGGAACATCTTATAAAAGTTTAGAAGGTATAAGTATAGGACAATCATCAACTTCCCAAAAAAAGCCAATTGTTAAGTCGCATTTAGACCAAAGAAAGCTTATGGAGCAAGGTCAAAGTCGGAGTCTTGTAAGAAGCAAAGTATCTCTTGCTCATGTAATCCAGCAGGCAGAAGGTCAGAGAAGTGGGTGGTCAAAACGTAAAGCGGTTTCTATTGCTGAGAAGCTTGAACAAGAGAATCTGAGACTGGAGCCAAGATCAAGGAGCTTGCTATGCTGGAAAGCATCAAGAGTAACCCGGCGAAAGCTGTCACGCTTGAAAATTCGAAGCCGAAAACCACGTGCACTGCTGAATCTTGTCTCATGTGGGAAATGTCTGTCTACAAAATCTCCAAGGTAG 3576 0.4301 MTRAVRSRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSRSLRDPSASPPSWHSPSVVDLLFKRVENDAVSQGGRRSVGIERRKEGRRLSGTSPPLVSIGSSRVAPGEVGRGNDGITAPSERSSRSGMGDGRKVGREESGRKNDRPDFLDVNQEEPLNQAGKSLAEDVISRHSVSKDRKSKQRGKNVRDVQVKTLSEQLNDVPLDSDDLASSNIHFRGRFPRQEKIIEEVEARMRSHGSGMNRGKRRKFRSARRTRVATTSRDIGAENEMSVASNSLAQASAHHKYHLEEADEFGDENVTRAPKNGCGIPWNWSRIHHRGKTILDMAGRSLSCGLSDSRLKKGAFTANGRNISEMPVASERSSSCTKSDAEALPLLVEASGSHASTENACWDRDYSGELGLFGDNLFKHDVDSDLASEARSGDQRKLRGNRHSRHQSLTQKYMPRTFRDMVGQNLVAQALSNAVMKRKVGLLYVFYGPHGTGKTSCARIFARALNCNSSEHPKPCGFCNYCVAHDMGKSRNIREVGPVSNFDFESIMDLLDNMIVSQLPSHYRVFIFDDCDTLSTDCWNAISKVIDRAPRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQWIATKEGLEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRVSVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTKERRRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPTSSDNSFNHSPFTLKDADAREAARLTGNPVDITNKARRLSMDARIENFHAGSSADGMTRGLGSEKKRHSVSGFTPQHAHSQATDKIRMSERQILGKNRKEIEEIWLEVLERMQVTGLKEFLFKEGKLISVSFGAAPTVQLMFSSQLTKSTAEKFRGHILQAFESVLGSSITIEIRCELNKDAASAVQQPLTLPATNDSSSQIRDFNGVGTLAHPSLTDSVEKRKGEIVEEAASQVEHKNSEQQVDAHGTSYKSLEGISIGQSSTSQKKPIVKSHLDQRKLMEQGQSRSLVRSKVSLAHVIQQAEGQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRVTRRKLSRLKIRSRKPRALLNLVSCGKCLSTKSPR 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00664 1191 Pfam DNA polymerase III, delta subunit 473 630 - -
Pumo2g00664 1191 Gene3D - 631 693 - -
Pumo2g00664 1191 SUPERFAMILY post-AAA+ oligomerization domain-like 701 804 IPR008921 GO:0003677|GO:0006260
Pumo2g00664 1191 CDD HLD_clamp_pol_III_gamma_tau 630 693 IPR045085 -
Pumo2g00664 1191 NCBIfam DNA polymerase III subunit gamma/tau 456 804 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Pumo2g00664 1191 FunFam DNA polymerase III subunit gamma/tau 631 693 - -
Pumo2g00664 1191 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 459 891 - -
Pumo2g00664 1191 MobiDBLite consensus disorder prediction 91 209 - -
Pumo2g00664 1191 Coils Coil 766 793 - -
Pumo2g00664 1191 MobiDBLite consensus disorder prediction 146 171 - -
Pumo2g00664 1191 FunFam DNA polymerase III subunit gamma/tau 452 629 - -
Pumo2g00664 1191 MobiDBLite consensus disorder prediction 864 895 - -
Pumo2g00664 1191 MobiDBLite consensus disorder prediction 189 209 - -
Pumo2g00664 1191 MobiDBLite consensus disorder prediction 259 275 - -
Pumo2g00664 1191 SMART AAA_5 489 630 IPR003593 GO:0016887
Pumo2g00664 1191 MobiDBLite consensus disorder prediction 255 281 - -
Pumo2g00664 1191 Pfam DNA polymerase III subunits gamma and tau domain III 685 804 IPR022754 GO:0003887
Pumo2g00664 1191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 677 IPR027417 -
Pumo2g00664 1191 MobiDBLite consensus disorder prediction 438 457 - -
Pumo2g00664 1191 Gene3D - 448 627 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00664 Pumo-Chr2 10567793 10574837 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00664 456 754 Core DNA Replication Machinery Family AT1G21690 23.588 1.94e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00664 - - gmx:100809005 2207.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00664 2 10567793 10574837 Pumo2g00664 2 10567793 10574837 ECH